Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GRHPR-209ENST00000494290 1593 ntTSL 517.12■□□□□ 0.334e-7■■■□□ 18.4
DDX55Q8NHQ9 ATG2A-202ENST00000418259 5654 ntTSL 517.06■□□□□ 0.324e-7■■■□□ 18.4
DDX55Q8NHQ9 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.7■□□□□ 0.264e-7■■■□□ 18.4
DDX55Q8NHQ9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.264e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.52■□□□□ 0.244e-7■■■□□ 18.4
DDX55Q8NHQ9 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.24■□□□□ 0.194e-7■■■□□ 18.4
DDX55Q8NHQ9 UPF1-204ENST00000596842 3825 ntTSL 215.64■□□□□ 0.094e-7■■■□□ 18.4
DDX55Q8NHQ9 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.034e-7■■■□□ 18.4
DDX55Q8NHQ9 STARD3-226ENST00000583884 602 ntTSL 314.56□□□□□ -0.084e-7■■■□□ 18.4
DDX55Q8NHQ9 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC14.15□□□□□ -0.144e-7■■■□□ 18.4
DDX55Q8NHQ9 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.164e-7■■■□□ 18.4
DDX55Q8NHQ9 GRHPR-210ENST00000497693 4762 ntTSL 213.93□□□□□ -0.184e-7■■■□□ 18.4
DDX55Q8NHQ9 TRAPPC9-208ENST00000520857 3693 ntTSL 1 (best)13.48□□□□□ -0.254e-7■■■□□ 18.4
DDX55Q8NHQ9 APBA2-202ENST00000411764 3599 ntTSL 1 (best) BASIC12.53□□□□□ -0.44e-7■■■□□ 18.4
DDX55Q8NHQ9 TRAPPC9-202ENST00000438773 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.454e-7■■■□□ 18.4
DDX55Q8NHQ9 APBA2-204ENST00000558259 3635 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.494e-7■■■□□ 18.4
DDX55Q8NHQ9 CS-202ENST00000542324 1893 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.644e-7■■■□□ 18.4
DDX55Q8NHQ9 CS-215ENST00000549143 2811 ntTSL 29.45□□□□□ -0.94e-7■■■□□ 18.4
DDX55Q8NHQ9 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC9.1□□□□□ -0.954e-7■■■□□ 18.4
DDX55Q8NHQ9 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.134e-7■■■□□ 18.4
DDX55Q8NHQ9 CS-213ENST00000548746 551 ntTSL 57.18□□□□□ -1.264e-7■■■□□ 18.4
DDX55Q8NHQ9 ANXA5-205ENST00000509648 1083 ntTSL 24.67□□□□□ -1.664e-7■■■□□ 18.4
DDX55Q8NHQ9 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.051e-6■■■□□ 18.3
DDX55Q8NHQ9 TGFBR3-210ENST00000533089 6455 ntTSL 1 (best)7.87□□□□□ -1.151e-6■■■□□ 18.3
DDX55Q8NHQ9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.12■■□□□ 1.291e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.241e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-201ENST00000304834 1633 ntTSL 1 (best)20.22■□□□□ 0.831e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.89■□□□□ 0.771e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-207ENST00000481094 382 ntTSL 516.78■□□□□ 0.281e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC16.2■□□□□ 0.181e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-205ENST00000470924 663 ntTSL 5 BASIC15.45■□□□□ 0.061e-10■■■□□ 18.3
DDX55Q8NHQ9 JPT1-208ENST00000481647 576 ntTSL 5 BASIC14.53□□□□□ -0.081e-10■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.68■■□□□ 1.542e-8■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.362e-8■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.37■■□□□ 1.172e-8■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC19.36■□□□□ 0.692e-8■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.62e-8■■■□□ 18.3
DDX55Q8NHQ9 OTUB1-201ENST00000301453 2493 ntTSL 216.91■□□□□ 0.32e-8■■■□□ 18.3
DDX55Q8NHQ9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.75■■□□□ 1.071e-18■■■□□ 18.3
DDX55Q8NHQ9 PLXND1-204ENST00000504524 1701 ntTSL 1 (best)20.86■□□□□ 0.931e-18■■■□□ 18.3
DDX55Q8NHQ9 PLXND1-202ENST00000501038 1633 ntTSL 1 (best)20.67■□□□□ 0.91e-18■■■□□ 18.3
DDX55Q8NHQ9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-18■■■□□ 18.3
DDX55Q8NHQ9 PLXND1-214ENST00000512744 2662 ntTSL 1 (best)17.17■□□□□ 0.341e-18■■■□□ 18.3
DDX55Q8NHQ9 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.074e-31■■■□□ 18.3
DDX55Q8NHQ9 SLC13A5-201ENST00000293800 3176 ntTSL 2 BASIC11.45□□□□□ -0.584e-31■■■□□ 18.3
DDX55Q8NHQ9 SLC13A5-209ENST00000574580 5398 nt10.84□□□□□ -0.674e-31■■■□□ 18.3
DDX55Q8NHQ9 HSPG2-210ENST00000481644 839 ntTSL 222.89■■□□□ 1.252e-10■■■□□ 18.3
DDX55Q8NHQ9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.232e-10■■■□□ 18.3
DDX55Q8NHQ9 MAN2C1-204ENST00000561693 1152 ntTSL 522.1■■□□□ 1.132e-10■■■□□ 18.3
DDX55Q8NHQ9 STK16-212ENST00000496443 2094 ntTSL 221.99■■□□□ 1.112e-10■■■□□ 18.3
DDX55Q8NHQ9 MAN2C1-205ENST00000562067 710 ntTSL 516.75■□□□□ 0.272e-10■■■□□ 18.3
DDX55Q8NHQ9 MAN2C1-221ENST00000564929 851 ntTSL 516.75■□□□□ 0.272e-10■■■□□ 18.3
DDX55Q8NHQ9 STK16-202ENST00000409260 1493 ntTSL 5 BASIC16.01■□□□□ 0.152e-10■■■□□ 18.3
DDX55Q8NHQ9 STK16-209ENST00000478018 1930 ntTSL 215.36■□□□□ 0.052e-10■■■□□ 18.3
DDX55Q8NHQ9 STK16-204ENST00000409638 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.442e-10■■■□□ 18.3
DDX55Q8NHQ9 PAPSS1-208ENST00000514815 296 ntTSL 514.93□□□□□ -0.023e-6■■■□□ 18.3
DDX55Q8NHQ9 PAPSS1-201ENST00000265174 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.493e-6■■■□□ 18.3
DDX55Q8NHQ9 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.994e-9■■■□□ 18.3
DDX55Q8NHQ9 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.994e-9■■■□□ 18.3
DDX55Q8NHQ9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.25■□□□□ 0.994e-9■■■□□ 18.3
DDX55Q8NHQ9 TM2D1-206ENST00000472357 744 ntTSL 25.76□□□□□ -1.494e-9■■■□□ 18.3
DDX55Q8NHQ9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.392e-7■■■□□ 18.3
DDX55Q8NHQ9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.91■■■□□ 2.062e-7■■■□□ 18.3
DDX55Q8NHQ9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC24.41■■□□□ 1.52e-7■■■□□ 18.3
DDX55Q8NHQ9 AES-210ENST00000590067 1100 ntTSL 221.35■■□□□ 1.018e-21■■■□□ 18.3
DDX55Q8NHQ9 MVD-202ENST00000561895 499 ntTSL 215.09■□□□□ 0.011e-15■■■□□ 18.3
DDX55Q8NHQ9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.791e-6■■■□□ 18.2
DDX55Q8NHQ9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.421e-6■■■□□ 18.2
DDX55Q8NHQ9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.64■■□□□ 1.371e-6■■■□□ 18.2
DDX55Q8NHQ9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.141e-6■■■□□ 18.2
DDX55Q8NHQ9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.95■■□□□ 1.11e-6■■■□□ 18.2
DDX55Q8NHQ9 SPHK1-209ENST00000591762 2502 ntTSL 219.13■□□□□ 0.651e-6■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-204ENST00000525616 780 ntTSL 227.58■■■□□ 2.011e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-220ENST00000534676 915 ntTSL 223.73■■□□□ 1.391e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-218ENST00000534280 766 ntTSL 323.29■■□□□ 1.321e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-203ENST00000524771 713 ntTSL 319.98■□□□□ 0.791e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-214ENST00000529836 580 ntTSL 319.23■□□□□ 0.671e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-211ENST00000528623 543 ntTSL 315.54■□□□□ 0.081e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-219ENST00000534465 779 ntTSL 315.49■□□□□ 0.071e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-207ENST00000527382 699 ntTSL 315.49■□□□□ 0.071e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-212ENST00000529284 1182 ntTSL 513.87□□□□□ -0.191e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-206ENST00000526224 578 ntTSL 312.99□□□□□ -0.331e-7■■■□□ 18.2
DDX55Q8NHQ9 PRMT1-208ENST00000527412 463 ntTSL 310.12□□□□□ -0.791e-7■■■□□ 18.2
DDX55Q8NHQ9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.131e-6■■■□□ 18.2
DDX55Q8NHQ9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC27.32■■□□□ 1.961e-6■■■□□ 18.2
DDX55Q8NHQ9 PRELID1-205ENST00000504594 886 ntTSL 322.28■■□□□ 1.161e-6■■■□□ 18.2
DDX55Q8NHQ9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.872e-17■■■□□ 18.2
DDX55Q8NHQ9 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.83■■□□□ 1.251e-6■■■□□ 18.2
DDX55Q8NHQ9 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.037e-7■■■□□ 18.2
DDX55Q8NHQ9 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.057e-7■■■□□ 18.2
DDX55Q8NHQ9 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.182e-7■■■□□ 18.2
DDX55Q8NHQ9 SERPINH1-208ENST00000526638 719 ntTSL 214.14□□□□□ -0.154e-17■■■□□ 18.2
DDX55Q8NHQ9 POLR2A-209ENST00000617998 6751 ntTSL 1 (best)11.56□□□□□ -0.563e-31■■■□□ 18.2
DDX55Q8NHQ9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.9■□□□□ 0.628e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.388e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.348e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.168e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-206ENST00000587326 1839 ntTSL 1 (best)15.9■□□□□ 0.148e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC15.62■□□□□ 0.098e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.57■□□□□ 0.088e-13■■■□□ 18.1
Retrieved 100 of 15,504 protein–RNA pairs in 77 ms