Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 MPPE1-204ENST00000344987 1831 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 DNM1L-220ENST00000549701 2487 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 MIR566-201ENST00000385187 94 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 RN7SKP102-201ENST00000411186 315 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 CCND3P1-201ENST00000438347 580 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 LINC00299-203ENST00000444688 537 ntTSL 4 BASIC15.34■□□□□ 0.05
SMARCA1P28370 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC234582.2-201ENST00000455788 568 ntTSL 3 BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 MIR4687-201ENST00000583618 80 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 AP005212.2-201ENST00000584979 510 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC244097.1-201ENST00000621631 1216 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 AC139713.2-207ENST00000641556 1292 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC020931.1-201ENST00000589622 1346 ntBASIC15.34■□□□□ 0.05
SMARCA1P28370 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
SMARCA1P28370 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.34■□□□□ 0.05
SMARCA1P28370 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SMARCA1P28370 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC15.33■□□□□ 0.05
SMARCA1P28370 PCDHB19P-202ENST00000625133 2914 ntBASIC15.33■□□□□ 0.05
SMARCA1P28370 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.33■□□□□ 0.05
SMARCA1P28370 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SMARCA1P28370 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
SMARCA1P28370 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
SMARCA1P28370 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SMARCA1P28370 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 IL18BP-202ENST00000337131 1606 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
SMARCA1P28370 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 KRT18P33-201ENST00000398525 1043 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 AL356653.1-201ENST00000402743 360 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC114501.1-201ENST00000445949 172 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC15.33■□□□□ 0.04
SMARCA1P28370 SEPHS2P1-201ENST00000511618 1162 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.33■□□□□ 0.04
SMARCA1P28370 KNOP1P1-201ENST00000542108 989 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 THY1-209ENST00000580275 578 ntTSL 3 BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC138466.4-201ENST00000623965 852 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC15.33■□□□□ 0.04
SMARCA1P28370 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC005252.3-201ENST00000623855 2258 ntBASIC15.33■□□□□ 0.04
SMARCA1P28370 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.33■□□□□ 0.04
SMARCA1P28370 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.33■□□□□ 0.04
SMARCA1P28370 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SMARCA1P28370 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms