RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 NISCHQ9Y2I1 1504 aa28.03■■■□□ 2.08
USH1C-201ENST00000005226 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
USH1C-201ENST00000005226 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
USH1C-201ENST00000005226 ZCCHC6Q5VYS8 1495 aaKnown RBP23.72■■□□□ 1.39
USH1C-201ENST00000005226 DCAF8L2P0C7V8 631 aa23.69■■□□□ 1.38
USH1C-201ENST00000005226 MYO15BQ96JP2 1530 aa23.59■■□□□ 1.37
USH1C-201ENST00000005226 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
USH1C-201ENST00000005226 CCDC180Q9P1Z9 1646 aa23.43■■□□□ 1.34
USH1C-201ENST00000005226 HRCP23327 699 aa23.38■■□□□ 1.33
USH1C-201ENST00000005226 PCGF6Q9BYE7 350 aa23.32■■□□□ 1.32
USH1C-201ENST00000005226 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
USH1C-201ENST00000005226 LOC105371045A0A1W2PR82 267 aa23.1■■□□□ 1.29
USH1C-201ENST00000005226 DCAF1Q9Y4B6 1507 aa22.76■■□□□ 1.23
USH1C-201ENST00000005226 TRIM26Q12899 539 aaPredicted RBP22.6■■□□□ 1.21
USH1C-201ENST00000005226 FAM9AQ8IZU1 332 aaPredicted RBP22.5■■□□□ 1.19
USH1C-201ENST00000005226 EHMT2Q96KQ7 1210 aa22.48■■□□□ 1.19
USH1C-201ENST00000005226 TRIM41Q8WV44 630 aa22.43■■□□□ 1.18
USH1C-201ENST00000005226 ABCC9O60706 1549 aa22.42■■□□□ 1.18
USH1C-201ENST00000005226 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
USH1C-201ENST00000005226 SCRIBQ14160 1630 aa22.39■■□□□ 1.17
USH1C-201ENST00000005226 RB1CC1Q8TDY2 1594 aa22.23■■□□□ 1.15
USH1C-201ENST00000005226 ZEB1P37275 1124 aaPredicted RBP22.11■■□□□ 1.13
USH1C-201ENST00000005226 CECR2Q9BXF3 1484 aa22.05■■□□□ 1.12
USH1C-201ENST00000005226 MROH2BQ7Z745 1585 aa21.93■■□□□ 1.1
USH1C-201ENST00000005226 SCAF1Q9H7N4 1312 aaKnown RBP21.85■■□□□ 1.09
USH1C-201ENST00000005226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.85■■□□□ 1.09
USH1C-201ENST00000005226 WIZO95785 1651 aa21.83■■□□□ 1.08
USH1C-201ENST00000005226 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
USH1C-201ENST00000005226 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
USH1C-201ENST00000005226 NACADO15069 1562 aa21.69■■□□□ 1.06
USH1C-201ENST00000005226 ABCC8Q09428 1581 aa21.54■■□□□ 1.04
USH1C-201ENST00000005226 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
USH1C-201ENST00000005226 CCDC88BA6NC98 1476 aa21.5■■□□□ 1.03
USH1C-201ENST00000005226 NEUROD1Q13562 356 aa21.49■■□□□ 1.03
USH1C-201ENST00000005226 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
USH1C-201ENST00000005226 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
USH1C-201ENST00000005226 DIEXFQ68CQ4 756 aaKnown RBP21.44■■□□□ 1.02
USH1C-201ENST00000005226 PELP1Q8IZL8 1130 aaKnown RBP21.44■■□□□ 1.02
USH1C-201ENST00000005226 SOGA1O94964 1423 aa21.43■■□□□ 1.02
USH1C-201ENST00000005226 CEP162Q5TB80 1403 aa21.39■■□□□ 1.01
USH1C-201ENST00000005226 UBTFP17480 764 aaKnown RBP21.38■■□□□ 1.01
USH1C-201ENST00000005226 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
USH1C-201ENST00000005226 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
USH1C-201ENST00000005226 CSRNP3Q8WYN3 585 aa21.31■■□□□ 1
USH1C-201ENST00000005226 GTF3C3Q9Y5Q9 886 aa21.3■■□□□ 1
USH1C-201ENST00000005226 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
USH1C-201ENST00000005226 SMARCA2P51531 1590 aa21.28■■□□□ 1
USH1C-201ENST00000005226 TNIKQ9UKE5 1360 aa21.26■□□□□ 0.99
USH1C-201ENST00000005226 SMARCA4P51532 1647 aa21.26■□□□□ 0.99
USH1C-201ENST00000005226 PABPN1Q86U42 306 aaKnown RBP eCLIP21.2■□□□□ 0.99
USH1C-201ENST00000005226 CENPBP07199 599 aaPredicted RBP21.2■□□□□ 0.98
USH1C-201ENST00000005226 HNRNPUL2Q1KMD3 747 aaKnown RBP21.18■□□□□ 0.98
USH1C-201ENST00000005226 YTHDC1Q96MU7 727 aaKnown RBP21.15■□□□□ 0.98
USH1C-201ENST00000005226 ZNF316A6NFI3 1004 aaPredicted RBP21.14■□□□□ 0.98
USH1C-201ENST00000005226 RANGAP1P46060 587 aaPredicted RBP21.12■□□□□ 0.97
USH1C-201ENST00000005226 GOLGA3Q08378 1498 aa21.06■□□□□ 0.96
USH1C-201ENST00000005226 UNC13AQ9UPW8 1703 aa21.05■□□□□ 0.96
USH1C-201ENST00000005226 EEA1Q15075 1411 aa21.05■□□□□ 0.96
USH1C-201ENST00000005226 MIER1Q8N108 512 aa21.01■□□□□ 0.95
USH1C-201ENST00000005226 CLIP1P30622 1438 aa20.93■□□□□ 0.94
USH1C-201ENST00000005226 SYNJ1O43426 1573 aa20.91■□□□□ 0.94
USH1C-201ENST00000005226 CEP164Q9UPV0 1460 aa20.88■□□□□ 0.93
USH1C-201ENST00000005226 APLP2Q06481 763 aa20.88■□□□□ 0.93
USH1C-201ENST00000005226 RAPGEF2Q9Y4G8 1499 aa20.83■□□□□ 0.93
USH1C-201ENST00000005226 BICRAQ9NZM4 1560 aa20.82■□□□□ 0.92
USH1C-201ENST00000005226 VPS8Q8N3P4 1428 aa20.81■□□□□ 0.92
USH1C-201ENST00000005226 KIF21BO75037 1637 aa20.77■□□□□ 0.92
USH1C-201ENST00000005226 ATAD2BQ9ULI0 1458 aa20.7■□□□□ 0.9
USH1C-201ENST00000005226 PEG3Q9GZU2 1588 aa20.68■□□□□ 0.9
USH1C-201ENST00000005226 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
USH1C-201ENST00000005226 KANK4Q5T7N3 995 aaPredicted RBP20.67■□□□□ 0.9
USH1C-201ENST00000005226 DHX57Q6P158 1386 aaKnown RBP20.59■□□□□ 0.89
USH1C-201ENST00000005226 ITGAEP38570 1179 aa20.56■□□□□ 0.88
USH1C-201ENST00000005226 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
USH1C-201ENST00000005226 TOP2BQ02880 1626 aa20.5■□□□□ 0.87
USH1C-201ENST00000005226 PRXQ9BXM0 1461 aa20.46■□□□□ 0.87
USH1C-201ENST00000005226 CLSPNQ9HAW4 1339 aa20.41■□□□□ 0.86
USH1C-201ENST00000005226 SUPT16HQ9Y5B9 1047 aaKnown RBP20.38■□□□□ 0.85
USH1C-201ENST00000005226 KCNH8Q96L42 1107 aa20.38■□□□□ 0.85
USH1C-201ENST00000005226 BIVM-ERCC5R4GMW8 1640 aa20.36■□□□□ 0.85
USH1C-201ENST00000005226 ERICH3Q5RHP9 1530 aa20.36■□□□□ 0.85
USH1C-201ENST00000005226 CUX1P39880 1505 aa20.35■□□□□ 0.85
USH1C-201ENST00000005226 RRBP1Q9P2E9 1410 aaKnown RBP20.33■□□□□ 0.85
USH1C-201ENST00000005226 CCNB3Q8WWL7 1395 aa20.33■□□□□ 0.84
USH1C-201ENST00000005226 MYT1Q01538 1121 aa20.33■□□□□ 0.84
USH1C-201ENST00000005226 KIF27Q86VH2 1401 aa20.32■□□□□ 0.84
USH1C-201ENST00000005226 ARHGAP35Q9NRY4 1499 aa20.3■□□□□ 0.84
USH1C-201ENST00000005226 RAB3GAP2Q9H2M9 1393 aa20.25■□□□□ 0.83
USH1C-201ENST00000005226 SIN3AQ96ST3 1273 aa20.23■□□□□ 0.83
USH1C-201ENST00000005226 P3H3Q8IVL6 736 aa20.21■□□□□ 0.83
USH1C-201ENST00000005226 ATP1B4Q9UN42 357 aaPredicted RBP20.2■□□□□ 0.82
USH1C-201ENST00000005226 FAM50AQ14320 339 aaKnown RBP20.19■□□□□ 0.82
USH1C-201ENST00000005226 HIRIP3Q9BW71 556 aaPredicted RBP20.18■□□□□ 0.82
USH1C-201ENST00000005226 CUX2O14529 1486 aa20.18■□□□□ 0.82
USH1C-201ENST00000005226 DDX10Q13206 875 aaKnown RBP20.18■□□□□ 0.82
USH1C-201ENST00000005226 BCANQ96GW7 911 aa20.17■□□□□ 0.82
USH1C-201ENST00000005226 NCAPD3P42695 1498 aa20.16■□□□□ 0.82
USH1C-201ENST00000005226 IGF1RP08069 1367 aa20.15■□□□□ 0.82
USH1C-201ENST00000005226 TSHZ2Q9NRE2 1034 aa20.14■□□□□ 0.82
USH1C-201ENST00000005226 MAPKBP1O60336 1514 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms