Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 AC064850.1-201ENST00000413279 1398 ntBASIC13.16□□□□□ -0.3
CLDN6P56747 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CLDN6P56747 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.16□□□□□ -0.3
CLDN6P56747 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLDN6P56747 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CLDN6P56747 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.16□□□□□ -0.3
CLDN6P56747 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CLDN6P56747 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.16□□□□□ -0.3
CLDN6P56747 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.16□□□□□ -0.3
CLDN6P56747 AC090505.1-201ENST00000430515 1834 ntBASIC13.16□□□□□ -0.3
CLDN6P56747 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLDN6P56747 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CLDN6P56747 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CLDN6P56747 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 AC006328.1-201ENST00000437571 379 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 TPT1P6-201ENST00000458298 514 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 RPL29P2-202ENST00000498671 657 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC13.15□□□□□ -0.3
CLDN6P56747 FAM187B2P-201ENST00000577135 713 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 MIR4326-201ENST00000582203 59 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 PRR20FP-201ENST00000603320 180 ntBASIC13.15□□□□□ -0.3
CLDN6P56747 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CLDN6P56747 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLDN6P56747 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLDN6P56747 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLDN6P56747 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CLDN6P56747 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.14□□□□□ -0.31
CLDN6P56747 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLDN6P56747 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLDN6P56747 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLDN6P56747 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC13.14□□□□□ -0.31
CLDN6P56747 USP17L6P-201ENST00000382470 1197 ntBASIC13.14□□□□□ -0.31
CLDN6P56747 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLDN6P56747 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC13.14□□□□□ -0.31
CLDN6P56747 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms