Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
MSH6P52701 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC31.4■■■□□ 2.62
MSH6P52701 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC31.4■■■□□ 2.62
MSH6P52701 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
MSH6P52701 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
MSH6P52701 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
MSH6P52701 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC31.39■■■□□ 2.62
MSH6P52701 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
MSH6P52701 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC31.39■■■□□ 2.62
MSH6P52701 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
MSH6P52701 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
MSH6P52701 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.38■■■□□ 2.61
MSH6P52701 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
MSH6P52701 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
MSH6P52701 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH6P52701 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
MSH6P52701 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
MSH6P52701 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
MSH6P52701 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC31.37■■■□□ 2.61
MSH6P52701 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.37■■■□□ 2.61
MSH6P52701 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
MSH6P52701 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
MSH6P52701 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC31.37■■■□□ 2.61
MSH6P52701 GAMT-205ENST00000640762 751 ntTSL 5 BASIC31.37■■■□□ 2.61
MSH6P52701 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH6P52701 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
MSH6P52701 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
MSH6P52701 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH6P52701 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC31.36■■■□□ 2.61
MSH6P52701 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC31.36■■■□□ 2.61
MSH6P52701 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC31.36■■■□□ 2.61
MSH6P52701 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC31.36■■■□□ 2.61
MSH6P52701 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH6P52701 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH6P52701 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
MSH6P52701 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH6P52701 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
MSH6P52701 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
MSH6P52701 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
MSH6P52701 AL161729.1-201ENST00000604104 1402 ntBASIC31.34■■■□□ 2.61
MSH6P52701 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
MSH6P52701 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC31.34■■■□□ 2.61
MSH6P52701 DUX4L4-201ENST00000566884 1269 ntBASIC31.34■■■□□ 2.61
MSH6P52701 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC31.34■■■□□ 2.61
MSH6P52701 PARP1-210ENST00000629232 477 ntTSL 5 BASIC31.34■■■□□ 2.61
MSH6P52701 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.34■■■□□ 2.61
MSH6P52701 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
MSH6P52701 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
MSH6P52701 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
MSH6P52701 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
MSH6P52701 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
MSH6P52701 KRT19P1-201ENST00000405746 1186 ntBASIC31.33■■■□□ 2.61
MSH6P52701 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
MSH6P52701 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
MSH6P52701 KRT18P6-201ENST00000555540 1265 ntBASIC31.33■■■□□ 2.61
MSH6P52701 AC011767.1-201ENST00000617410 1153 ntBASIC31.33■■■□□ 2.61
MSH6P52701 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
MSH6P52701 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
MSH6P52701 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH6P52701 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH6P52701 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
MSH6P52701 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH6P52701 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
MSH6P52701 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC31.32■■■□□ 2.6
MSH6P52701 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC31.32■■■□□ 2.6
MSH6P52701 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.32■■■□□ 2.6
MSH6P52701 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC31.31■■■□□ 2.6
MSH6P52701 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC31.31■■■□□ 2.6
MSH6P52701 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
MSH6P52701 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
MSH6P52701 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC31.31■■■□□ 2.6
MSH6P52701 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.31■■■□□ 2.6
MSH6P52701 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH6P52701 SLC6A10P-202ENST00000431994 2058 ntBASIC31.3■■■□□ 2.6
MSH6P52701 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH6P52701 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
MSH6P52701 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH6P52701 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
MSH6P52701 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
MSH6P52701 KRT18P11-201ENST00000435214 1283 ntBASIC31.3■■■□□ 2.6
MSH6P52701 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC31.3■■■□□ 2.6
MSH6P52701 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
MSH6P52701 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
MSH6P52701 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
MSH6P52701 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
MSH6P52701 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC31.29■■■□□ 2.6
MSH6P52701 MDK-213ENST00000617138 635 ntTSL 2 BASIC31.29■■■□□ 2.6
MSH6P52701 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
MSH6P52701 AL121749.1-202ENST00000609313 2153 ntBASIC31.28■■■□□ 2.6
MSH6P52701 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.28■■■□□ 2.6
MSH6P52701 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
MSH6P52701 AC093827.2-201ENST00000512654 315 ntBASIC31.28■■■□□ 2.6
MSH6P52701 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC31.28■■■□□ 2.6
MSH6P52701 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
MSH6P52701 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
MSH6P52701 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
MSH6P52701 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC31.27■■■□□ 2.6
MSH6P52701 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.27■■■□□ 2.6
MSH6P52701 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
MSH6P52701 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC31.26■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms