RNA–Protein interactions for RNA: ENST00000254998.2

NXT1-201, Transcript of nuclear transport factor 2 like export factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NXT1, Length 1,123 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXT1-201ENST00000254998 NISCHQ9Y2I1 1504 aa52.4■■■■■ 5.98
NXT1-201ENST00000254998 CCDC180Q9P1Z9 1646 aa46.57■■■■■ 5.05
NXT1-201ENST00000254998 ABCC9O60706 1549 aa45.39■■■■■ 4.86
NXT1-201ENST00000254998 NACADO15069 1562 aa43.76■■■■■ 4.6
NXT1-201ENST00000254998 RB1CC1Q8TDY2 1594 aa43.76■■■■■ 4.6
NXT1-201ENST00000254998 ZCCHC6Q5VYS8 1495 aaKnown RBP43.68■■■■■ 4.58
NXT1-201ENST00000254998 MYO15BQ96JP2 1530 aa43.6■■■■■ 4.57
NXT1-201ENST00000254998 DCAF8L2P0C7V8 631 aa43.59■■■■■ 4.57
NXT1-201ENST00000254998 DCAF1Q9Y4B6 1507 aa43.43■■■■■ 4.54
NXT1-201ENST00000254998 UNC13AQ9UPW8 1703 aa42.73■■■■■ 4.43
NXT1-201ENST00000254998 BICRAQ9NZM4 1560 aa42.44■■■■■ 4.39
NXT1-201ENST00000254998 PABPN1Q86U42 306 aaKnown RBP eCLIP42.41■■■■■ 4.38
NXT1-201ENST00000254998 SCRIBQ14160 1630 aa42.41■■■■■ 4.38
NXT1-201ENST00000254998 SHROOM4Q9ULL8 1493 aa42.1■■■■■ 4.33
NXT1-201ENST00000254998 DNAJC5BQ9UF47 199 aa41.59■■■■■ 4.25
NXT1-201ENST00000254998 EIF4G1Q04637 1599 aaKnown RBP41.3■■■■■ 4.2
NXT1-201ENST00000254998 CC2D2AQ9P2K1 1620 aa41.09■■■■■ 4.17
NXT1-201ENST00000254998 CECR2Q9BXF3 1484 aa40.81■■■■■ 4.12
NXT1-201ENST00000254998 SMARCA4P51532 1647 aa40.63■■■■■ 4.09
NXT1-201ENST00000254998 BAZ1AQ9NRL2 1556 aaPredicted RBP40.61■■■■■ 4.09
NXT1-201ENST00000254998 NCAPD3P42695 1498 aa40.39■■■■■ 4.06
NXT1-201ENST00000254998 ATAD2BQ9ULI0 1458 aa40.39■■■■■ 4.06
NXT1-201ENST00000254998 SMARCA2P51531 1590 aa40.37■■■■■ 4.05
NXT1-201ENST00000254998 MROH2BQ7Z745 1585 aa40.35■■■■■ 4.05
NXT1-201ENST00000254998 PEG3Q9GZU2 1588 aa40.28■■■■■ 4.04
NXT1-201ENST00000254998 HMGXB3Q12766 1538 aa40.2■■■■■ 4.03
NXT1-201ENST00000254998 BAZ1BQ9UIG0 1483 aaKnown RBP40.05■■■■■ 4
NXT1-201ENST00000254998 RSF1Q96T23 1441 aaPredicted RBP39.95■■■■□ 3.99
NXT1-201ENST00000254998 WIZO95785 1651 aa39.89■■■■□ 3.98
NXT1-201ENST00000254998 TOP2AP11388 1531 aaKnown RBP39.53■■■■□ 3.92
NXT1-201ENST00000254998 NESP48681 1621 aa39.31■■■■□ 3.88
NXT1-201ENST00000254998 LAMC3Q9Y6N6 1575 aa39.29■■■■□ 3.88
NXT1-201ENST00000254998 CADPSQ9ULU8 1353 aa39.2■■■■□ 3.87
NXT1-201ENST00000254998 ERCC6Q03468 1493 aa39.12■■■■□ 3.85
NXT1-201ENST00000254998 CCDC88BA6NC98 1476 aa39.05■■■■□ 3.84
NXT1-201ENST00000254998 PDS5BQ9NTI5 1447 aa39.02■■■■□ 3.84
NXT1-201ENST00000254998 CFTRP13569 1480 aa38.99■■■■□ 3.83
NXT1-201ENST00000254998 SUPT5HO00267 1087 aaKnown RBP38.89■■■■□ 3.82
NXT1-201ENST00000254998 KIF21AQ7Z4S6 1674 aa38.85■■■■□ 3.81
NXT1-201ENST00000254998 CUX2O14529 1486 aa38.76■■■■□ 3.8
NXT1-201ENST00000254998 THOC2Q8NI27 1593 aaKnown RBP38.74■■■■□ 3.79
NXT1-201ENST00000254998 FANCD2Q9BXW9 1451 aa38.72■■■■□ 3.79
NXT1-201ENST00000254998 PRDM2Q13029 1718 aa38.68■■■■□ 3.78
NXT1-201ENST00000254998 CEP164Q9UPV0 1460 aa38.67■■■■□ 3.78
NXT1-201ENST00000254998 MRC2Q9UBG0 1479 aa38.61■■■■□ 3.77
NXT1-201ENST00000254998 WDR62O43379 1518 aa38.48■■■■□ 3.75
NXT1-201ENST00000254998 URB2Q14146 1524 aaKnown RBP38.33■■■■□ 3.73
NXT1-201ENST00000254998 ABCC8Q09428 1581 aa38.16■■■■□ 3.7
NXT1-201ENST00000254998 TOPBP1Q92547 1522 aa38.12■■■■□ 3.69
NXT1-201ENST00000254998 DNMBPQ6XZF7 1577 aa38.1■■■■□ 3.69
NXT1-201ENST00000254998 IFT140Q96RY7 1462 aa37.88■■■■□ 3.65
NXT1-201ENST00000254998 CUX1P39880 1505 aa37.87■■■■□ 3.65
NXT1-201ENST00000254998 POLA1P09884 1462 aaPredicted RBP37.8■■■■□ 3.64
NXT1-201ENST00000254998 TARBP1Q13395 1621 aaKnown RBP37.71■■■■□ 3.63
NXT1-201ENST00000254998 FGD5Q6ZNL6 1462 aa37.71■■■■□ 3.63
NXT1-201ENST00000254998 ZNF608Q9ULD9 1512 aaPredicted RBP37.66■■■■□ 3.62
NXT1-201ENST00000254998 WRNQ14191 1432 aaPredicted RBP eCLIP37.65■■■■□ 3.62
NXT1-201ENST00000254998 SOGA1O94964 1423 aa37.64■■■■□ 3.62
NXT1-201ENST00000254998 RAD54L2Q9Y4B4 1467 aa37.6■■■■□ 3.61
NXT1-201ENST00000254998 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
NXT1-201ENST00000254998 BIVM-ERCC5R4GMW8 1640 aa37.57■■■■□ 3.6
NXT1-201ENST00000254998 SYNJ1O43426 1573 aa37.54■■■■□ 3.6
NXT1-201ENST00000254998 EIF4G3O43432 1585 aaKnown RBP37.51■■■■□ 3.6
NXT1-201ENST00000254998 WDR97A6NE52 1622 aa37.47■■■■□ 3.59
NXT1-201ENST00000254998 AQRO60306 1485 aaKnown RBP eCLIP37.45■■■■□ 3.595e-6■■□□□ 14.3
NXT1-201ENST00000254998 DNAJC5Q9H3Z4 198 aa37.44■■■■□ 3.58
NXT1-201ENST00000254998 ABCA10Q8WWZ4 1543 aa37.39■■■■□ 3.58
NXT1-201ENST00000254998 TDRD9Q8NDG6 1382 aaKnown RBP37.39■■■■□ 3.58
NXT1-201ENST00000254998 ABCA5Q8WWZ7 1642 aa37.21■■■■□ 3.55
NXT1-201ENST00000254998 GRIN2BQ13224 1484 aa37.21■■■■□ 3.55
NXT1-201ENST00000254998 GAPVD1Q14C86 1478 aa37.21■■■■□ 3.55
NXT1-201ENST00000254998 OSCARQ8IYS5 282 aa37.13■■■■□ 3.53
NXT1-201ENST00000254998 SNAPC4Q5SXM2 1469 aa37.12■■■■□ 3.53
NXT1-201ENST00000254998 MAGI1Q96QZ7 1491 aaPredicted RBP37.12■■■■□ 3.53
NXT1-201ENST00000254998 PBRM1Q86U86 1689 aa37.1■■■■□ 3.53
NXT1-201ENST00000254998 CHD1O14646 1710 aa37.01■■■■□ 3.51
NXT1-201ENST00000254998 SYNJ2O15056 1496 aa36.96■■■■□ 3.51
NXT1-201ENST00000254998 ERICH3Q5RHP9 1530 aa36.95■■■■□ 3.5
NXT1-201ENST00000254998 FBLN2P98095 1184 aa36.92■■■■□ 3.5
NXT1-201ENST00000254998 CHMP7Q8WUX9 453 aaPredicted RBP36.89■■■■□ 3.5
NXT1-201ENST00000254998 KIF27Q86VH2 1401 aa36.86■■■■□ 3.49
NXT1-201ENST00000254998 ADAMTS12P58397 1594 aa36.85■■■■□ 3.49
NXT1-201ENST00000254998 FHAD1B1AJZ9 1412 aa36.81■■■■□ 3.48
NXT1-201ENST00000254998 TRIM41Q8WV44 630 aa36.77■■■■□ 3.48
NXT1-201ENST00000254998 GRIN2AQ12879 1464 aa36.72■■■■□ 3.47
NXT1-201ENST00000254998 IGF1RP08069 1367 aa36.71■■■■□ 3.47
NXT1-201ENST00000254998 CLASP1Q7Z460 1538 aa36.67■■■■□ 3.46
NXT1-201ENST00000254998 CUL7Q14999 1698 aa36.61■■■■□ 3.45
NXT1-201ENST00000254998 NUP160Q12769 1436 aa36.59■■■■□ 3.45
NXT1-201ENST00000254998 ARHGEF11O15085 1522 aa36.52■■■■□ 3.44
NXT1-201ENST00000254998 CEP170Q5SW79 1584 aa36.52■■■■□ 3.44
NXT1-201ENST00000254998 RUSC2Q8N2Y8 1516 aa36.5■■■■□ 3.43
NXT1-201ENST00000254998 RIMBP3CA6NJZ7 1639 aa36.5■■■■□ 3.43
NXT1-201ENST00000254998 RIMBP3BA6NNM3 1639 aa36.5■■■■□ 3.43
NXT1-201ENST00000254998 RIMBP3Q9UFD9 1639 aa36.5■■■■□ 3.43
NXT1-201ENST00000254998 CARMIL1Q5VZK9 1371 aa36.49■■■■□ 3.43
NXT1-201ENST00000254998 CHIC1Q5VXU3 224 aa36.41■■■■□ 3.42
NXT1-201ENST00000254998 SHROOM2Q13796 1616 aa36.3■■■■□ 3.4
NXT1-201ENST00000254998 RAPGEF2Q9Y4G8 1499 aa36.28■■■■□ 3.4
NXT1-201ENST00000254998 EEA1Q15075 1411 aa36.25■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms