Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
CD74P04233 HNRNPLP1-201ENST00000421896 1501 ntBASIC11.64□□□□□ -0.55
CD74P04233 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 ECM1-202ENST00000369047 2070 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC11.64□□□□□ -0.55
CD74P04233 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC11.64□□□□□ -0.55
CD74P04233 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CD74P04233 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC11.64□□□□□ -0.55
CD74P04233 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 AC006144.1-201ENST00000424220 1600 ntBASIC11.64□□□□□ -0.55
CD74P04233 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC11.64□□□□□ -0.55
CD74P04233 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CD74P04233 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CD74P04233 HPSE2-201ENST00000370546 1849 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 DDX11-223ENST00000542838 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 PISD-203ENST00000397500 2194 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 MIR770-201ENST00000390219 98 ntBASIC11.63□□□□□ -0.55
CD74P04233 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 HLA-V-201ENST00000429037 534 ntBASIC11.63□□□□□ -0.55
CD74P04233 RPL28-204ENST00000431533 590 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 AC011742.3-201ENST00000439053 820 ntBASIC11.63□□□□□ -0.55
CD74P04233 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC11.63□□□□□ -0.55
CD74P04233 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.63□□□□□ -0.55
CD74P04233 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 MIR3940-201ENST00000579148 102 ntBASIC11.63□□□□□ -0.55
CD74P04233 MIR3197-201ENST00000582241 73 ntBASIC11.63□□□□□ -0.55
CD74P04233 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC11.63□□□□□ -0.55
CD74P04233 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 AC138951.2-201ENST00000623455 1161 ntBASIC11.63□□□□□ -0.55
CD74P04233 RPL35-206ENST00000629845 340 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC11.63□□□□□ -0.55
CD74P04233 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC11.63□□□□□ -0.55
CD74P04233 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CD74P04233 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.62□□□□□ -0.55
CD74P04233 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC11.62□□□□□ -0.55
CD74P04233 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC11.62□□□□□ -0.55
CD74P04233 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.62□□□□□ -0.55
CD74P04233 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CD74P04233 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms