RNA–Protein interactions for RNA: ENST00000327554.2

CCDC60-201, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC60, Length 2,450 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-201ENST00000327554 NISCHQ9Y2I1 1504 aa24.55■■□□□ 1.52
CCDC60-201ENST00000327554 HRCP23327 699 aa21.69■■□□□ 1.06
CCDC60-201ENST00000327554 SHROOM4Q9ULL8 1493 aa21.48■■□□□ 1.03
CCDC60-201ENST00000327554 SUPT5HO00267 1087 aaKnown RBP21.35■■□□□ 1.01
CCDC60-201ENST00000327554 MYO15BQ96JP2 1530 aa21.33■■□□□ 1
CCDC60-201ENST00000327554 PCGF6Q9BYE7 350 aa21.18■□□□□ 0.98
CCDC60-201ENST00000327554 PPARGC1BQ86YN6 1023 aaKnown RBP21.17■□□□□ 0.98
CCDC60-201ENST00000327554 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
CCDC60-201ENST00000327554 ZCCHC6Q5VYS8 1495 aaKnown RBP20.92■□□□□ 0.94
CCDC60-201ENST00000327554 DCAF1Q9Y4B6 1507 aa20.91■□□□□ 0.94
CCDC60-201ENST00000327554 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
CCDC60-201ENST00000327554 CCDC180Q9P1Z9 1646 aa20.69■□□□□ 0.9
CCDC60-201ENST00000327554 TRIM26Q12899 539 aaPredicted RBP20.59■□□□□ 0.89
CCDC60-201ENST00000327554 LOC105371045A0A1W2PR82 267 aa20.55■□□□□ 0.88
CCDC60-201ENST00000327554 SCAF1Q9H7N4 1312 aaKnown RBP20.48■□□□□ 0.87
CCDC60-201ENST00000327554 ZEB1P37275 1124 aaPredicted RBP20.41■□□□□ 0.86
CCDC60-201ENST00000327554 DCAF8L2P0C7V8 631 aa20.11■□□□□ 0.81
CCDC60-201ENST00000327554 MYT1Q01538 1121 aa20■□□□□ 0.79
CCDC60-201ENST00000327554 ACIN1Q9UKV3 1341 aaKnown RBP19.99■□□□□ 0.79
CCDC60-201ENST00000327554 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
CCDC60-201ENST00000327554 ABCC9O60706 1549 aa19.9■□□□□ 0.78
CCDC60-201ENST00000327554 TRIM41Q8WV44 630 aa19.79■□□□□ 0.76
CCDC60-201ENST00000327554 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
CCDC60-201ENST00000327554 FAM9AQ8IZU1 332 aaPredicted RBP19.71■□□□□ 0.75
CCDC60-201ENST00000327554 RSF1Q96T23 1441 aaPredicted RBP19.7■□□□□ 0.74
CCDC60-201ENST00000327554 CENPBP07199 599 aaPredicted RBP19.69■□□□□ 0.74
CCDC60-201ENST00000327554 RB1CC1Q8TDY2 1594 aa19.68■□□□□ 0.74
CCDC60-201ENST00000327554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.65■□□□□ 0.74
CCDC60-201ENST00000327554 DIEXFQ68CQ4 756 aaKnown RBP19.64■□□□□ 0.74
CCDC60-201ENST00000327554 CCER1Q8TC90 406 aaPredicted RBP19.6■□□□□ 0.73
CCDC60-201ENST00000327554 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
CCDC60-201ENST00000327554 SCRIBQ14160 1630 aa19.42■□□□□ 0.7
CCDC60-201ENST00000327554 ZNF316A6NFI3 1004 aaPredicted RBP19.3■□□□□ 0.68
CCDC60-201ENST00000327554 WRNQ14191 1432 aaPredicted RBP eCLIP19.28■□□□□ 0.68
CCDC60-201ENST00000327554 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
CCDC60-201ENST00000327554 EIF4G1Q04637 1599 aaKnown RBP19.2■□□□□ 0.66
CCDC60-201ENST00000327554 MIER1Q8N108 512 aa19.16■□□□□ 0.66
CCDC60-201ENST00000327554 MROH2BQ7Z745 1585 aa19.16■□□□□ 0.66
CCDC60-201ENST00000327554 CECR2Q9BXF3 1484 aa19.15■□□□□ 0.66
CCDC60-201ENST00000327554 WIZO95785 1651 aa19.13■□□□□ 0.65
CCDC60-201ENST00000327554 TTBK1Q5TCY1 1321 aaPredicted RBP19.11■□□□□ 0.65
CCDC60-201ENST00000327554 CEP162Q5TB80 1403 aa19.11■□□□□ 0.65
CCDC60-201ENST00000327554 BAZ1AQ9NRL2 1556 aaPredicted RBP19.04■□□□□ 0.64
CCDC60-201ENST00000327554 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
CCDC60-201ENST00000327554 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
CCDC60-201ENST00000327554 ABCC8Q09428 1581 aa18.95■□□□□ 0.62
CCDC60-201ENST00000327554 CLSPNQ9HAW4 1339 aa18.91■□□□□ 0.62
CCDC60-201ENST00000327554 SUPT16HQ9Y5B9 1047 aaKnown RBP18.89■□□□□ 0.61
CCDC60-201ENST00000327554 NACADO15069 1562 aa18.88■□□□□ 0.61
CCDC60-201ENST00000327554 SOGA1O94964 1423 aa18.87■□□□□ 0.61
CCDC60-201ENST00000327554 EEA1Q15075 1411 aa18.82■□□□□ 0.6
CCDC60-201ENST00000327554 ANP32EQ9BTT0 268 aa18.8■□□□□ 0.6
CCDC60-201ENST00000327554 HNRNPUL2Q1KMD3 747 aaKnown RBP18.8■□□□□ 0.6
CCDC60-201ENST00000327554 TSHZ2Q9NRE2 1034 aa18.8■□□□□ 0.6
CCDC60-201ENST00000327554 RUSC2Q8N2Y8 1516 aa18.78■□□□□ 0.6
CCDC60-201ENST00000327554 TOP2AP11388 1531 aaKnown RBP18.77■□□□□ 0.6
CCDC60-201ENST00000327554 GOLGA3Q08378 1498 aa18.77■□□□□ 0.6
CCDC60-201ENST00000327554 CSRNP3Q8WYN3 585 aa18.77■□□□□ 0.59
CCDC60-201ENST00000327554 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
CCDC60-201ENST00000327554 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
CCDC60-201ENST00000327554 BCL11AQ9H165 835 aa18.71■□□□□ 0.59
CCDC60-201ENST00000327554 KIF21BO75037 1637 aa18.61■□□□□ 0.57
CCDC60-201ENST00000327554 VPS8Q8N3P4 1428 aa18.6■□□□□ 0.57
CCDC60-201ENST00000327554 CLIP1P30622 1438 aa18.58■□□□□ 0.57
CCDC60-201ENST00000327554 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.56
CCDC60-201ENST00000327554 SMARCA4P51532 1647 aa18.58■□□□□ 0.56
CCDC60-201ENST00000327554 DHX57Q6P158 1386 aaKnown RBP18.57■□□□□ 0.56
CCDC60-201ENST00000327554 BAZ1BQ9UIG0 1483 aaKnown RBP18.47■□□□□ 0.55
CCDC60-201ENST00000327554 APLP2Q06481 763 aa18.44■□□□□ 0.54
CCDC60-201ENST00000327554 SYNJ1O43426 1573 aa18.43■□□□□ 0.54
CCDC60-201ENST00000327554 KCNH8Q96L42 1107 aa18.41■□□□□ 0.54
CCDC60-201ENST00000327554 BCANQ96GW7 911 aa18.39■□□□□ 0.53
CCDC60-201ENST00000327554 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
CCDC60-201ENST00000327554 FKBP8Q14318 412 aa18.34■□□□□ 0.53
CCDC60-201ENST00000327554 RBM19Q9Y4C8 960 aaKnown RBP18.34■□□□□ 0.53
CCDC60-201ENST00000327554 CUX2O14529 1486 aa18.33■□□□□ 0.52
CCDC60-201ENST00000327554 RRBP1Q9P2E9 1410 aaKnown RBP18.29■□□□□ 0.52
CCDC60-201ENST00000327554 UNC13AQ9UPW8 1703 aa18.26■□□□□ 0.51
CCDC60-201ENST00000327554 ARAP1Q96P48 1450 aa18.25■□□□□ 0.51
CCDC60-201ENST00000327554 RANGAP1P46060 587 aaPredicted RBP18.23■□□□□ 0.51
CCDC60-201ENST00000327554 KANK4Q5T7N3 995 aaPredicted RBP18.23■□□□□ 0.51
CCDC60-201ENST00000327554 MAPKBP1O60336 1514 aa18.2■□□□□ 0.5
CCDC60-201ENST00000327554 MSH5O43196 834 aa18.2■□□□□ 0.5
CCDC60-201ENST00000327554 NEFLP07196 543 aa18.17■□□□□ 0.5
CCDC60-201ENST00000327554 ERICH3Q5RHP9 1530 aa18.16■□□□□ 0.5
CCDC60-201ENST00000327554 PEG3Q9GZU2 1588 aa18.16■□□□□ 0.5
CCDC60-201ENST00000327554 CCNB3Q8WWL7 1395 aa18.14■□□□□ 0.49
CCDC60-201ENST00000327554 ITGAEP38570 1179 aa18.13■□□□□ 0.49
CCDC60-201ENST00000327554 WDR97A6NE52 1622 aa18.13■□□□□ 0.49
CCDC60-201ENST00000327554 DDX10Q13206 875 aaKnown RBP18.13■□□□□ 0.49
CCDC60-201ENST00000327554 TOP2BQ02880 1626 aa18.1■□□□□ 0.49
CCDC60-201ENST00000327554 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
CCDC60-201ENST00000327554 PRXQ9BXM0 1461 aa18.1■□□□□ 0.49
CCDC60-201ENST00000327554 RAB3GAP2Q9H2M9 1393 aa18.09■□□□□ 0.49
CCDC60-201ENST00000327554 FANCIQ9NVI1 1328 aa18.07■□□□□ 0.48
CCDC60-201ENST00000327554 CCER2I3L3R5 266 aa18.07■□□□□ 0.48
CCDC60-201ENST00000327554 TRIM52Q96A61 297 aa18.06■□□□□ 0.48
CCDC60-201ENST00000327554 BIVM-ERCC5R4GMW8 1640 aa18.04■□□□□ 0.48
CCDC60-201ENST00000327554 SETD5Q9C0A6 1442 aa17.97■□□□□ 0.47
CCDC60-201ENST00000327554 SIN3AQ96ST3 1273 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms