RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PELP1Q8IZL8 1130 aaKnown RBP22.03■■□□□ 1.12
COL6A3-209ENST00000472056 MYT1Q01538 1121 aa21.49■■□□□ 1.03
COL6A3-209ENST00000472056 DCAF8L2P0C7V8 631 aa20.99■□□□□ 0.95
COL6A3-209ENST00000472056 CCER1Q8TC90 406 aaPredicted RBP20.9■□□□□ 0.94
COL6A3-209ENST00000472056 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
COL6A3-209ENST00000472056 NISCHQ9Y2I1 1504 aa20.67■□□□□ 0.9
COL6A3-209ENST00000472056 ZEB1P37275 1124 aaPredicted RBP20.64■□□□□ 0.89
COL6A3-209ENST00000472056 ERICH6Q7L0X2 663 aa20.61■□□□□ 0.89
COL6A3-209ENST00000472056 SUPT5HO00267 1087 aaKnown RBP20.46■□□□□ 0.87
COL6A3-209ENST00000472056 APLP2Q06481 763 aa20.45■□□□□ 0.86
COL6A3-209ENST00000472056 YTHDC1Q96MU7 727 aaKnown RBP20.28■□□□□ 0.84
COL6A3-209ENST00000472056 FAM9AQ8IZU1 332 aaPredicted RBP20.24■□□□□ 0.83
COL6A3-209ENST00000472056 NEFLP07196 543 aa20.1■□□□□ 0.81
COL6A3-209ENST00000472056 PCGF6Q9BYE7 350 aa19.87■□□□□ 0.77
COL6A3-209ENST00000472056 TTBK1Q5TCY1 1321 aaPredicted RBP19.81■□□□□ 0.76
COL6A3-209ENST00000472056 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
COL6A3-209ENST00000472056 DAXXQ9UER7 740 aaPredicted RBP19.66■□□□□ 0.74
COL6A3-209ENST00000472056 TRIM26Q12899 539 aaPredicted RBP19.37■□□□□ 0.69
COL6A3-209ENST00000472056 EHMT2Q96KQ7 1210 aa19.36■□□□□ 0.69
COL6A3-209ENST00000472056 RTL5Q5HYW3 569 aaPredicted RBP19.34■□□□□ 0.69
COL6A3-209ENST00000472056 TRIM41Q8WV44 630 aa19.34■□□□□ 0.69
COL6A3-209ENST00000472056 HRCP23327 699 aa19.23■□□□□ 0.67
COL6A3-209ENST00000472056 ZNF316A6NFI3 1004 aaPredicted RBP19.11■□□□□ 0.65
COL6A3-209ENST00000472056 UBTFP17480 764 aaKnown RBP19.1■□□□□ 0.65
COL6A3-209ENST00000472056 CLSPNQ9HAW4 1339 aa19.05■□□□□ 0.64
COL6A3-209ENST00000472056 MYT1LQ9UL68 1186 aa18.99■□□□□ 0.63
COL6A3-209ENST00000472056 GLIPR1L2Q4G1C9 344 aa18.86■□□□□ 0.61
COL6A3-209ENST00000472056 ATP1B4Q9UN42 357 aaPredicted RBP18.84■□□□□ 0.61
COL6A3-209ENST00000472056 DIEXFQ68CQ4 756 aaKnown RBP18.8■□□□□ 0.6
COL6A3-209ENST00000472056 CDK11AQ9UQ88 783 aaPredicted RBP18.73■□□□□ 0.59
COL6A3-209ENST00000472056 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
COL6A3-209ENST00000472056 ANP32AP39687 249 aaKnown RBP18.56■□□□□ 0.56
COL6A3-209ENST00000472056 ANP32BQ92688 251 aaKnown RBP18.56■□□□□ 0.56
COL6A3-209ENST00000472056 ZBTB47Q9UFB7 747 aaPredicted RBP18.5■□□□□ 0.55
COL6A3-209ENST00000472056 ANP32CO43423 234 aa18.46■□□□□ 0.55
COL6A3-209ENST00000472056 GTF3C3Q9Y5Q9 886 aa18.42■□□□□ 0.54
COL6A3-209ENST00000472056 POLR3GLQ9BT43 218 aa18.37■□□□□ 0.53
COL6A3-209ENST00000472056 NEFMP07197 916 aa18.3■□□□□ 0.52
COL6A3-209ENST00000472056 ACIN1Q9UKV3 1341 aaKnown RBP18.29■□□□□ 0.52
COL6A3-209ENST00000472056 CHIC1Q5VXU3 224 aa18.28■□□□□ 0.52
COL6A3-209ENST00000472056 HNRNPUL2Q1KMD3 747 aaKnown RBP18.26■□□□□ 0.51
COL6A3-209ENST00000472056 EIF5BO60841 1220 aaKnown RBP18.26■□□□□ 0.51
COL6A3-209ENST00000472056 UPF2Q9HAU5 1272 aaKnown RBP18.26■□□□□ 0.51
COL6A3-209ENST00000472056 ITGAEP38570 1179 aa18.23■□□□□ 0.51
COL6A3-209ENST00000472056 ANP32EQ9BTT0 268 aa18.2■□□□□ 0.5
COL6A3-209ENST00000472056 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
COL6A3-209ENST00000472056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.16■□□□□ 0.5
COL6A3-209ENST00000472056 CANXP27824 592 aaKnown RBP18.15■□□□□ 0.5
COL6A3-209ENST00000472056 DCAF1Q9Y4B6 1507 aa18.12■□□□□ 0.49
COL6A3-209ENST00000472056 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
COL6A3-209ENST00000472056 TNNT2P45379 298 aaPredicted RBP18.08■□□□□ 0.48
COL6A3-209ENST00000472056 HSP90AA1P07900 732 aaKnown RBP18.07■□□□□ 0.48
COL6A3-209ENST00000472056 LOC105371045A0A1W2PR82 267 aa18.02■□□□□ 0.48
COL6A3-209ENST00000472056 FAM50AQ14320 339 aaKnown RBP17.99■□□□□ 0.47
COL6A3-209ENST00000472056 CCDC180Q9P1Z9 1646 aa17.96■□□□□ 0.47
COL6A3-209ENST00000472056 BCANQ96GW7 911 aa17.96■□□□□ 0.46
COL6A3-209ENST00000472056 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.93■□□□□ 0.46
COL6A3-209ENST00000472056 TRIM52Q96A61 297 aa17.92■□□□□ 0.46
COL6A3-209ENST00000472056 DDRGK1Q96HY6 314 aa17.91■□□□□ 0.46
COL6A3-209ENST00000472056 TRIM44Q96DX7 344 aaPredicted RBP17.89■□□□□ 0.45
COL6A3-209ENST00000472056 CNGB1Q14028 1251 aaPredicted RBP17.87■□□□□ 0.45
COL6A3-209ENST00000472056 BECN1Q14457 450 aa17.85■□□□□ 0.45
COL6A3-209ENST00000472056 NEUROD1Q13562 356 aa17.84■□□□□ 0.45
COL6A3-209ENST00000472056 ERICH6BQ5W0A0 696 aa17.82■□□□□ 0.44
COL6A3-209ENST00000472056 NCLP19338 710 aaKnown RBP17.81■□□□□ 0.44
COL6A3-209ENST00000472056 TONSLQ96HA7 1378 aa17.78■□□□□ 0.44
COL6A3-209ENST00000472056 GOLGA6L22H0YM25 854 aa17.77■□□□□ 0.43
COL6A3-209ENST00000472056 CDK11BP21127 795 aaKnown RBP17.76■□□□□ 0.43
COL6A3-209ENST00000472056 FKBP8Q14318 412 aa17.76■□□□□ 0.43
COL6A3-209ENST00000472056 CCDC136Q96JN2 1154 aa17.75■□□□□ 0.43
COL6A3-209ENST00000472056 NPM2Q86SE8 214 aaKnown RBP17.74■□□□□ 0.43
COL6A3-209ENST00000472056 PPM1GO15355 546 aaPredicted RBP17.65■□□□□ 0.42
COL6A3-209ENST00000472056 HNRNPUQ00839 825 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL6A3-209ENST00000472056 MYH16Q9H6N6 1097 aa17.63■□□□□ 0.41
COL6A3-209ENST00000472056 ZNF326Q5BKZ1 582 aaKnown RBP17.61■□□□□ 0.41
COL6A3-209ENST00000472056 SLC24A1O60721 1099 aa17.6■□□□□ 0.41
COL6A3-209ENST00000472056 NBR1Q14596 966 aa17.59■□□□□ 0.41
COL6A3-209ENST00000472056 TMC1Q8TDI8 760 aa17.56■□□□□ 0.4
COL6A3-209ENST00000472056 NRDCO43847 1150 aa17.51■□□□□ 0.39
COL6A3-209ENST00000472056 GOLGA6L6A8MZA4 724 aa17.5■□□□□ 0.39
COL6A3-209ENST00000472056 BCL11AQ9H165 835 aa17.5■□□□□ 0.39
COL6A3-209ENST00000472056 CASC1Q6TDU7 716 aa17.49■□□□□ 0.39
COL6A3-209ENST00000472056 WDR43Q15061 677 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL6A3-209ENST00000472056 ZRSR1Q15695 479 aaKnown RBP17.48■□□□□ 0.39
COL6A3-209ENST00000472056 CHAF1AQ13111 956 aaPredicted RBP17.46■□□□□ 0.39
COL6A3-209ENST00000472056 CHMP4BQ9H444 224 aaKnown RBP17.46■□□□□ 0.39
COL6A3-209ENST00000472056 PTMSP20962 102 aa17.45■□□□□ 0.38
COL6A3-209ENST00000472056 CFAP44Q96MT7 982 aa17.44■□□□□ 0.38
COL6A3-209ENST00000472056 CSRNP3Q8WYN3 585 aa17.43■□□□□ 0.38
COL6A3-209ENST00000472056 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
COL6A3-209ENST00000472056 EEA1Q15075 1411 aa17.42■□□□□ 0.38
COL6A3-209ENST00000472056 L1TD1Q5T7N2 865 aaKnown RBP17.42■□□□□ 0.38
COL6A3-209ENST00000472056 PTMAP06454 111 aaKnown RBP17.41■□□□□ 0.38
COL6A3-209ENST00000472056 SCAF1Q9H7N4 1312 aaKnown RBP17.39■□□□□ 0.37
COL6A3-209ENST00000472056 DNTTIP2Q5QJE6 756 aaKnown RBP17.39■□□□□ 0.37
COL6A3-209ENST00000472056 FAM9BQ8IZU0 186 aa17.36■□□□□ 0.37
COL6A3-209ENST00000472056 MRS2Q9HD23 443 aa17.36■□□□□ 0.37
COL6A3-209ENST00000472056 MS4A1P11836 297 aa17.33■□□□□ 0.36
COL6A3-209ENST00000472056 DDX10Q13206 875 aaKnown RBP17.32■□□□□ 0.36
COL6A3-209ENST00000472056 NAP1L5Q96NT1 182 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 1210.8 ms