RNA–Protein interactions for RNA: ENST00000269228.9

NPC1-201, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPC1, Length 5,157 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-201ENST00000269228 DCAF8L2P0C7V8 631 aa24.82■■□□□ 1.56
NPC1-201ENST00000269228 NISCHQ9Y2I1 1504 aa24.62■■□□□ 1.53
NPC1-201ENST00000269228 SUPT5HO00267 1087 aaKnown RBP23.3■■□□□ 1.32
NPC1-201ENST00000269228 SHROOM4Q9ULL8 1493 aa23.21■■□□□ 1.31
NPC1-201ENST00000269228 EHMT2Q96KQ7 1210 aa22.38■■□□□ 1.17
NPC1-201ENST00000269228 FAM9AQ8IZU1 332 aaPredicted RBP21.93■■□□□ 1.1
NPC1-201ENST00000269228 APLP2Q06481 763 aa21.75■■□□□ 1.07
NPC1-201ENST00000269228 TRIM41Q8WV44 630 aa21.6■■□□□ 1.05
NPC1-201ENST00000269228 RANGAP1P46060 587 aaPredicted RBP21.53■■□□□ 1.04
NPC1-201ENST00000269228 TTBK1Q5TCY1 1321 aaPredicted RBP21.52■■□□□ 1.04
NPC1-201ENST00000269228 ABCC9O60706 1549 aa21.38■■□□□ 1.01
NPC1-201ENST00000269228 UBTFP17480 764 aaKnown RBP21.28■■□□□ 1
NPC1-201ENST00000269228 ATP1B4Q9UN42 357 aaPredicted RBP21.27■■□□□ 1
NPC1-201ENST00000269228 PCGF6Q9BYE7 350 aa21.2■□□□□ 0.98
NPC1-201ENST00000269228 PABPN1Q86U42 306 aaKnown RBP eCLIP21.11■□□□□ 0.97
NPC1-201ENST00000269228 PPARGC1BQ86YN6 1023 aaKnown RBP20.84■□□□□ 0.93
NPC1-201ENST00000269228 CCER1Q8TC90 406 aaPredicted RBP20.82■□□□□ 0.92
NPC1-201ENST00000269228 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
NPC1-201ENST00000269228 LOC105371045A0A1W2PR82 267 aa20.7■□□□□ 0.9
NPC1-201ENST00000269228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.64■□□□□ 0.9
NPC1-201ENST00000269228 HNRNPUL2Q1KMD3 747 aaKnown RBP20.64■□□□□ 0.9
NPC1-201ENST00000269228 ZEB1P37275 1124 aaPredicted RBP20.61■□□□□ 0.89
NPC1-201ENST00000269228 ITGAEP38570 1179 aa20.5■□□□□ 0.87
NPC1-201ENST00000269228 PELP1Q8IZL8 1130 aaKnown RBP20.49■□□□□ 0.87
NPC1-201ENST00000269228 MYT1LQ9UL68 1186 aa20.45■□□□□ 0.86
NPC1-201ENST00000269228 TRIM26Q12899 539 aaPredicted RBP20.43■□□□□ 0.86
NPC1-201ENST00000269228 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
NPC1-201ENST00000269228 SCRIBQ14160 1630 aa20.37■□□□□ 0.85
NPC1-201ENST00000269228 CCDC180Q9P1Z9 1646 aa20.34■□□□□ 0.85
NPC1-201ENST00000269228 FBLN2P98095 1184 aa20.21■□□□□ 0.83
NPC1-201ENST00000269228 CENPBP07199 599 aaPredicted RBP20.19■□□□□ 0.82
NPC1-201ENST00000269228 FAM50AQ14320 339 aaKnown RBP20.06■□□□□ 0.8
NPC1-201ENST00000269228 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
NPC1-201ENST00000269228 POLR3GLQ9BT43 218 aa20.03■□□□□ 0.8
NPC1-201ENST00000269228 RB1CC1Q8TDY2 1594 aa19.98■□□□□ 0.79
NPC1-201ENST00000269228 CSRNP3Q8WYN3 585 aa19.97■□□□□ 0.79
NPC1-201ENST00000269228 P3H3Q8IVL6 736 aa19.94■□□□□ 0.78
NPC1-201ENST00000269228 HRCP23327 699 aa19.92■□□□□ 0.78
NPC1-201ENST00000269228 ARID3CA6NKF2 412 aa19.88■□□□□ 0.77
NPC1-201ENST00000269228 TRIM52Q96A61 297 aa19.87■□□□□ 0.77
NPC1-201ENST00000269228 NEFLP07196 543 aa19.85■□□□□ 0.77
NPC1-201ENST00000269228 CNGB1Q14028 1251 aaPredicted RBP19.85■□□□□ 0.77
NPC1-201ENST00000269228 NACADO15069 1562 aa19.78■□□□□ 0.76
NPC1-201ENST00000269228 NEUROD1Q13562 356 aa19.72■□□□□ 0.75
NPC1-201ENST00000269228 SLC4A1APQ9BWU0 796 aaKnown RBP19.7■□□□□ 0.74
NPC1-201ENST00000269228 MYT1Q01538 1121 aa19.67■□□□□ 0.74
NPC1-201ENST00000269228 RSF1Q96T23 1441 aaPredicted RBP19.62■□□□□ 0.73
NPC1-201ENST00000269228 ZNF777Q9ULD5 760 aaPredicted RBP19.62■□□□□ 0.73
NPC1-201ENST00000269228 ERICH6Q7L0X2 663 aa19.61■□□□□ 0.73
NPC1-201ENST00000269228 ZNF326Q5BKZ1 582 aaKnown RBP19.59■□□□□ 0.73
NPC1-201ENST00000269228 CDK11AQ9UQ88 783 aaPredicted RBP19.58■□□□□ 0.73
NPC1-201ENST00000269228 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
NPC1-201ENST00000269228 DIEXFQ68CQ4 756 aaKnown RBP19.47■□□□□ 0.71
NPC1-201ENST00000269228 CHMP7Q8WUX9 453 aaPredicted RBP19.46■□□□□ 0.71
NPC1-201ENST00000269228 NPM1P06748 294 aaKnown RBP eCLIP19.43■□□□□ 0.7
NPC1-201ENST00000269228 DCAF1Q9Y4B6 1507 aa19.43■□□□□ 0.7
NPC1-201ENST00000269228 CECR2Q9BXF3 1484 aa19.38■□□□□ 0.69
NPC1-201ENST00000269228 BAZ1AQ9NRL2 1556 aaPredicted RBP19.34■□□□□ 0.69
NPC1-201ENST00000269228 BCANQ96GW7 911 aa19.32■□□□□ 0.68
NPC1-201ENST00000269228 WRNQ14191 1432 aaPredicted RBP eCLIP19.32■□□□□ 0.68
NPC1-201ENST00000269228 ESF1Q9H501 851 aaKnown RBP19.26■□□□□ 0.67
NPC1-201ENST00000269228 CHIC2Q9UKJ5 165 aa19.26■□□□□ 0.67
NPC1-201ENST00000269228 CLIP1P30622 1438 aa19.24■□□□□ 0.67
NPC1-201ENST00000269228 MTUS2Q5JR59 1369 aa19.22■□□□□ 0.67
NPC1-201ENST00000269228 ANP32CO43423 234 aa19.21■□□□□ 0.67
NPC1-201ENST00000269228 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
NPC1-201ENST00000269228 CHGAP10645 457 aaKnown RBP19.19■□□□□ 0.66
NPC1-201ENST00000269228 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
NPC1-201ENST00000269228 PLPPR3Q6T4P5 718 aa19.18■□□□□ 0.66
NPC1-201ENST00000269228 EEA1Q15075 1411 aa19.18■□□□□ 0.66
NPC1-201ENST00000269228 KIF27Q86VH2 1401 aa19.16■□□□□ 0.66
NPC1-201ENST00000269228 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.15■□□□□ 0.663e-7■□□□□ 8.9
NPC1-201ENST00000269228 GOLGA3Q08378 1498 aa19.14■□□□□ 0.65
NPC1-201ENST00000269228 TSPY4P0CV99 314 aa19.13■□□□□ 0.65
NPC1-201ENST00000269228 TSPY10P0CW01 314 aa19.13■□□□□ 0.65
NPC1-201ENST00000269228 STAG3Q9UJ98 1225 aa19.12■□□□□ 0.65
NPC1-201ENST00000269228 KCNH8Q96L42 1107 aa19.12■□□□□ 0.65
NPC1-201ENST00000269228 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
NPC1-201ENST00000269228 TONSLQ96HA7 1378 aa19.1■□□□□ 0.65
NPC1-201ENST00000269228 MYO15BQ96JP2 1530 aa19.09■□□□□ 0.65
NPC1-201ENST00000269228 DAXXQ9UER7 740 aaPredicted RBP19.09■□□□□ 0.65
NPC1-201ENST00000269228 CEP162Q5TB80 1403 aa19.07■□□□□ 0.64
NPC1-201ENST00000269228 PLEKHD1A6NEE1 506 aa19.05■□□□□ 0.64
NPC1-201ENST00000269228 CLSPNQ9HAW4 1339 aa18.99■□□□□ 0.63
NPC1-201ENST00000269228 CEP164Q9UPV0 1460 aa18.99■□□□□ 0.63
NPC1-201ENST00000269228 RRP7BPQ9NSQ0 103 aa18.98■□□□□ 0.63
NPC1-201ENST00000269228 CCDC88BA6NC98 1476 aa18.98■□□□□ 0.63
NPC1-201ENST00000269228 SMARCA2P51531 1590 aa18.96■□□□□ 0.63
NPC1-201ENST00000269228 TNIKQ9UKE5 1360 aa18.95■□□□□ 0.62
NPC1-201ENST00000269228 SLC24A1O60721 1099 aa18.95■□□□□ 0.62
NPC1-201ENST00000269228 CUX2O14529 1486 aa18.94■□□□□ 0.62
NPC1-201ENST00000269228 NEFMP07197 916 aa18.92■□□□□ 0.62
NPC1-201ENST00000269228 KDM2AQ9Y2K7 1162 aa18.92■□□□□ 0.62
NPC1-201ENST00000269228 SOGA1O94964 1423 aa18.9■□□□□ 0.62
NPC1-201ENST00000269228 CARMIL1Q5VZK9 1371 aa18.89■□□□□ 0.62
NPC1-201ENST00000269228 CFDP1Q9UEE9 299 aaPredicted RBP18.89■□□□□ 0.61
NPC1-201ENST00000269228 PDS5BQ9NTI5 1447 aa18.85■□□□□ 0.61
NPC1-201ENST00000269228 DDX10Q13206 875 aaKnown RBP18.84■□□□□ 0.61
NPC1-201ENST00000269228 ABCC8Q09428 1581 aa18.83■□□□□ 0.61
NPC1-201ENST00000269228 WIZO95785 1651 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms