RNA–Protein interactions for RNA: ENST00000369047.8

ECM1-202, Transcript of extracellular matrix protein 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ECM1, Length 2,070 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-202ENST00000369047 NISCHQ9Y2I1 1504 aa28.76■■■□□ 2.2
ECM1-202ENST00000369047 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.68
ECM1-202ENST00000369047 ABCC9O60706 1549 aa24.64■■□□□ 1.53
ECM1-202ENST00000369047 ZCCHC6Q5VYS8 1495 aaKnown RBP24.02■■□□□ 1.44
ECM1-202ENST00000369047 NACADO15069 1562 aa23.97■■□□□ 1.43
ECM1-202ENST00000369047 RB1CC1Q8TDY2 1594 aa23.94■■□□□ 1.42
ECM1-202ENST00000369047 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
ECM1-202ENST00000369047 DCAF1Q9Y4B6 1507 aa23.89■■□□□ 1.42
ECM1-202ENST00000369047 DCAF8L2P0C7V8 631 aa23.85■■□□□ 1.41
ECM1-202ENST00000369047 SHROOM4Q9ULL8 1493 aa23.42■■□□□ 1.34
ECM1-202ENST00000369047 UNC13AQ9UPW8 1703 aa23.3■■□□□ 1.32
ECM1-202ENST00000369047 SCRIBQ14160 1630 aa23.23■■□□□ 1.31
ECM1-202ENST00000369047 BICRAQ9NZM4 1560 aa23.09■■□□□ 1.29
ECM1-202ENST00000369047 PABPN1Q86U42 306 aaKnown RBP eCLIP23.01■■□□□ 1.27
ECM1-202ENST00000369047 SUPT5HO00267 1087 aaKnown RBP22.89■■□□□ 1.25
ECM1-202ENST00000369047 EIF4G1Q04637 1599 aaKnown RBP22.5■■□□□ 1.19
ECM1-202ENST00000369047 CC2D2AQ9P2K1 1620 aa22.34■■□□□ 1.17
ECM1-202ENST00000369047 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.17
ECM1-202ENST00000369047 CECR2Q9BXF3 1484 aa22.29■■□□□ 1.16
ECM1-202ENST00000369047 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
ECM1-202ENST00000369047 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
ECM1-202ENST00000369047 CHIC1Q5VXU3 224 aa22.24■■□□□ 1.15
ECM1-202ENST00000369047 SMARCA2P51531 1590 aa22.15■■□□□ 1.14
ECM1-202ENST00000369047 RSF1Q96T23 1441 aaPredicted RBP22.13■■□□□ 1.13
ECM1-202ENST00000369047 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
ECM1-202ENST00000369047 PEG3Q9GZU2 1588 aa22.09■■□□□ 1.13
ECM1-202ENST00000369047 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
ECM1-202ENST00000369047 NCAPD3P42695 1498 aa22.06■■□□□ 1.12
ECM1-202ENST00000369047 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
ECM1-202ENST00000369047 BAZ1BQ9UIG0 1483 aaKnown RBP21.95■■□□□ 1.1
ECM1-202ENST00000369047 WIZO95785 1651 aa21.9■■□□□ 1.1
ECM1-202ENST00000369047 TOP2AP11388 1531 aaKnown RBP21.76■■□□□ 1.07
ECM1-202ENST00000369047 TRIM41Q8WV44 630 aa21.51■■□□□ 1.03
ECM1-202ENST00000369047 LAMC3Q9Y6N6 1575 aa21.49■■□□□ 1.03
ECM1-202ENST00000369047 CCDC88BA6NC98 1476 aa21.43■■□□□ 1.02
ECM1-202ENST00000369047 CADPSQ9ULU8 1353 aa21.42■■□□□ 1.02
ECM1-202ENST00000369047 LOC105371045A0A1W2PR82 267 aa21.41■■□□□ 1.02
ECM1-202ENST00000369047 NESP48681 1621 aa21.35■■□□□ 1.01
ECM1-202ENST00000369047 CFTRP13569 1480 aa21.34■■□□□ 1.01
ECM1-202ENST00000369047 PDS5BQ9NTI5 1447 aa21.33■■□□□ 1
ECM1-202ENST00000369047 ERCC6Q03468 1493 aa21.3■■□□□ 1
ECM1-202ENST00000369047 PRDM2Q13029 1718 aa21.29■■□□□ 1
ECM1-202ENST00000369047 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
ECM1-202ENST00000369047 FANCD2Q9BXW9 1451 aa21.17■□□□□ 0.98
ECM1-202ENST00000369047 CEP164Q9UPV0 1460 aa21.16■□□□□ 0.98
ECM1-202ENST00000369047 FAM9AQ8IZU1 332 aaPredicted RBP21.09■□□□□ 0.97
ECM1-202ENST00000369047 PCGF6Q9BYE7 350 aa21.09■□□□□ 0.97
ECM1-202ENST00000369047 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.96
ECM1-202ENST00000369047 THOC2Q8NI27 1593 aaKnown RBP21.07■□□□□ 0.96
ECM1-202ENST00000369047 CUX2O14529 1486 aa21.03■□□□□ 0.96
ECM1-202ENST00000369047 WDR62O43379 1518 aa20.99■□□□□ 0.95
ECM1-202ENST00000369047 HRCP23327 699 aa20.99■□□□□ 0.95
ECM1-202ENST00000369047 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
ECM1-202ENST00000369047 TRIM26Q12899 539 aaPredicted RBP20.98■□□□□ 0.95
ECM1-202ENST00000369047 URB2Q14146 1524 aaKnown RBP20.9■□□□□ 0.94
ECM1-202ENST00000369047 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
ECM1-202ENST00000369047 EEA1Q15075 1411 aa20.88■□□□□ 0.93
ECM1-202ENST00000369047 TOPBP1Q92547 1522 aa20.85■□□□□ 0.93
ECM1-202ENST00000369047 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
ECM1-202ENST00000369047 CUX1P39880 1505 aa20.75■□□□□ 0.91
ECM1-202ENST00000369047 EHMT2Q96KQ7 1210 aa20.74■□□□□ 0.91
ECM1-202ENST00000369047 SOGA1O94964 1423 aa20.74■□□□□ 0.91
ECM1-202ENST00000369047 IFT140Q96RY7 1462 aa20.72■□□□□ 0.91
ECM1-202ENST00000369047 CSRNP3Q8WYN3 585 aa20.71■□□□□ 0.91
ECM1-202ENST00000369047 BIVM-ERCC5R4GMW8 1640 aa20.71■□□□□ 0.91
ECM1-202ENST00000369047 TOP2BQ02880 1626 aa20.7■□□□□ 0.9
ECM1-202ENST00000369047 POLA1P09884 1462 aaPredicted RBP20.68■□□□□ 0.9
ECM1-202ENST00000369047 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
ECM1-202ENST00000369047 SYNJ1O43426 1573 aa20.66■□□□□ 0.9
ECM1-202ENST00000369047 TNIKQ9UKE5 1360 aa20.66■□□□□ 0.9
ECM1-202ENST00000369047 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
ECM1-202ENST00000369047 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
ECM1-202ENST00000369047 TARBP1Q13395 1621 aaKnown RBP20.6■□□□□ 0.89
ECM1-202ENST00000369047 GOLGA3Q08378 1498 aa20.58■□□□□ 0.88
ECM1-202ENST00000369047 CEP162Q5TB80 1403 aa20.56■□□□□ 0.88
ECM1-202ENST00000369047 RAD54L2Q9Y4B4 1467 aa20.54■□□□□ 0.88
ECM1-202ENST00000369047 KIF21BO75037 1637 aa20.52■□□□□ 0.88
ECM1-202ENST00000369047 ABCA10Q8WWZ4 1543 aa20.51■□□□□ 0.87
ECM1-202ENST00000369047 UBTFP17480 764 aaKnown RBP20.5■□□□□ 0.87
ECM1-202ENST00000369047 ZEB1P37275 1124 aaPredicted RBP20.5■□□□□ 0.87
ECM1-202ENST00000369047 EIF4G3O43432 1585 aaKnown RBP20.49■□□□□ 0.87
ECM1-202ENST00000369047 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
ECM1-202ENST00000369047 AQRO60306 1485 aaKnown RBP eCLIP20.41■□□□□ 0.86
ECM1-202ENST00000369047 TDRD9Q8NDG6 1382 aaKnown RBP20.4■□□□□ 0.86
ECM1-202ENST00000369047 ABCA5Q8WWZ7 1642 aa20.4■□□□□ 0.86
ECM1-202ENST00000369047 GAPVD1Q14C86 1478 aa20.39■□□□□ 0.85
ECM1-202ENST00000369047 GRIN2BQ13224 1484 aa20.38■□□□□ 0.85
ECM1-202ENST00000369047 PBRM1Q86U86 1689 aa20.36■□□□□ 0.85
ECM1-202ENST00000369047 PPARGC1BQ86YN6 1023 aaKnown RBP20.34■□□□□ 0.85
ECM1-202ENST00000369047 KIF27Q86VH2 1401 aa20.33■□□□□ 0.85
ECM1-202ENST00000369047 MAGI1Q96QZ7 1491 aaPredicted RBP20.33■□□□□ 0.84
ECM1-202ENST00000369047 ERICH3Q5RHP9 1530 aa20.3■□□□□ 0.84
ECM1-202ENST00000369047 RAPGEF2Q9Y4G8 1499 aa20.28■□□□□ 0.84
ECM1-202ENST00000369047 SNAPC4Q5SXM2 1469 aa20.28■□□□□ 0.84
ECM1-202ENST00000369047 CLIP1P30622 1438 aa20.28■□□□□ 0.84
ECM1-202ENST00000369047 PRXQ9BXM0 1461 aa20.25■□□□□ 0.83
ECM1-202ENST00000369047 SYNJ2O15056 1496 aa20.22■□□□□ 0.83
ECM1-202ENST00000369047 ADAMTS12P58397 1594 aa20.21■□□□□ 0.83
ECM1-202ENST00000369047 CUL7Q14999 1698 aa20.2■□□□□ 0.82
ECM1-202ENST00000369047 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms