Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.4□□□□□ -0.27
COL28A1Q2UY09 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC009093.10-201ENST00000641956 1442 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC118758.2-201ENST00000614242 2813 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 SNORA57-201ENST00000383870 149 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 CDCA4P4-201ENST00000435216 680 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 SCARNA12-201ENST00000459155 270 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC092896.1-201ENST00000465850 380 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 OR2A1-AS1-210ENST00000496968 531 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 NEK4P3-201ENST00000604859 544 ntBASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL28A1Q2UY09 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC005562.1-201ENST00000583030 3219 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AL139385.1-201ENST00000611744 3272 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC104961.1-201ENST00000427605 771 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 ASS1P2-201ENST00000439895 1223 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC098934.1-203ENST00000442868 1262 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms