RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PELP1Q8IZL8 1130 aaKnown RBP22.6■■□□□ 1.21
USP49-203ENST00000394253 MYT1Q01538 1121 aa21.73■■□□□ 1.07
USP49-203ENST00000394253 CCER1Q8TC90 406 aaPredicted RBP21.45■■□□□ 1.02
USP49-203ENST00000394253 ERICH6Q7L0X2 663 aa21.44■■□□□ 1.02
USP49-203ENST00000394253 DCAF8L2P0C7V8 631 aa21.08■□□□□ 0.96
USP49-203ENST00000394253 YTHDC1Q96MU7 727 aaKnown RBP20.91■□□□□ 0.94
USP49-203ENST00000394253 CENPBP07199 599 aaPredicted RBP20.87■□□□□ 0.93
USP49-203ENST00000394253 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
USP49-203ENST00000394253 APLP2Q06481 763 aa20.54■□□□□ 0.88
USP49-203ENST00000394253 NEFLP07196 543 aa20.51■□□□□ 0.87
USP49-203ENST00000394253 DAXXQ9UER7 740 aaPredicted RBP20.36■□□□□ 0.85
USP49-203ENST00000394253 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
USP49-203ENST00000394253 ZEB1P37275 1124 aaPredicted RBP20.29■□□□□ 0.84
USP49-203ENST00000394253 SUPT5HO00267 1087 aaKnown RBP20.28■□□□□ 0.84
USP49-203ENST00000394253 EHMT2Q96KQ7 1210 aa19.96■□□□□ 0.79
USP49-203ENST00000394253 RTL5Q5HYW3 569 aaPredicted RBP19.91■□□□□ 0.78
USP49-203ENST00000394253 PCGF6Q9BYE7 350 aa19.89■□□□□ 0.77
USP49-203ENST00000394253 ZNF316A6NFI3 1004 aaPredicted RBP19.77■□□□□ 0.76
USP49-203ENST00000394253 GLIPR1L2Q4G1C9 344 aa19.49■□□□□ 0.71
USP49-203ENST00000394253 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
USP49-203ENST00000394253 CLSPNQ9HAW4 1339 aa19.37■□□□□ 0.69
USP49-203ENST00000394253 ATP1B4Q9UN42 357 aaPredicted RBP19.2■□□□□ 0.66
USP49-203ENST00000394253 ANP32BQ92688 251 aaKnown RBP19.07■□□□□ 0.64
USP49-203ENST00000394253 EIF5BO60841 1220 aaKnown RBP19.04■□□□□ 0.64
USP49-203ENST00000394253 RANGAP1P46060 587 aaPredicted RBP19.03■□□□□ 0.64
USP49-203ENST00000394253 ZBTB47Q9UFB7 747 aaPredicted RBP18.98■□□□□ 0.63
USP49-203ENST00000394253 UBTFP17480 764 aaKnown RBP18.97■□□□□ 0.63
USP49-203ENST00000394253 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
USP49-203ENST00000394253 CDK11AQ9UQ88 783 aaPredicted RBP18.94■□□□□ 0.62
USP49-203ENST00000394253 HRCP23327 699 aa18.91■□□□□ 0.62
USP49-203ENST00000394253 TRIM41Q8WV44 630 aa18.91■□□□□ 0.62
USP49-203ENST00000394253 MYT1LQ9UL68 1186 aa18.89■□□□□ 0.62
USP49-203ENST00000394253 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
USP49-203ENST00000394253 ANP32AP39687 249 aaKnown RBP18.84■□□□□ 0.61
USP49-203ENST00000394253 SLC4A1APQ9BWU0 796 aaKnown RBP18.76■□□□□ 0.59
USP49-203ENST00000394253 DIEXFQ68CQ4 756 aaKnown RBP18.69■□□□□ 0.58
USP49-203ENST00000394253 TNNT2P45379 298 aaPredicted RBP18.69■□□□□ 0.58
USP49-203ENST00000394253 HSP90AA1P07900 732 aaKnown RBP18.6■□□□□ 0.57
USP49-203ENST00000394253 NISCHQ9Y2I1 1504 aa18.59■□□□□ 0.57
USP49-203ENST00000394253 CNGB1Q14028 1251 aaPredicted RBP18.58■□□□□ 0.57
USP49-203ENST00000394253 CANXP27824 592 aaKnown RBP18.57■□□□□ 0.56
USP49-203ENST00000394253 NEFMP07197 916 aa18.55■□□□□ 0.56
USP49-203ENST00000394253 UPF2Q9HAU5 1272 aaKnown RBP18.5■□□□□ 0.55
USP49-203ENST00000394253 GTF3C3Q9Y5Q9 886 aa18.5■□□□□ 0.55
USP49-203ENST00000394253 CDK11BP21127 795 aaKnown RBP18.48■□□□□ 0.55
USP49-203ENST00000394253 ITGAEP38570 1179 aa18.44■□□□□ 0.54
USP49-203ENST00000394253 BCANQ96GW7 911 aa18.44■□□□□ 0.54
USP49-203ENST00000394253 ANP32CO43423 234 aa18.43■□□□□ 0.54
USP49-203ENST00000394253 PPARGC1BQ86YN6 1023 aaKnown RBP18.36■□□□□ 0.53
USP49-203ENST00000394253 TRIM44Q96DX7 344 aaPredicted RBP18.36■□□□□ 0.53
USP49-203ENST00000394253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.34■□□□□ 0.53
USP49-203ENST00000394253 HNRNPUL2Q1KMD3 747 aaKnown RBP18.34■□□□□ 0.53
USP49-203ENST00000394253 NPM2Q86SE8 214 aaKnown RBP18.3■□□□□ 0.52
USP49-203ENST00000394253 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
USP49-203ENST00000394253 SLC24A1O60721 1099 aa18.29■□□□□ 0.52
USP49-203ENST00000394253 BCL11AQ9H165 835 aa18.26■□□□□ 0.51
USP49-203ENST00000394253 ANP32EQ9BTT0 268 aa18.24■□□□□ 0.51
USP49-203ENST00000394253 NCLP19338 710 aaKnown RBP18.2■□□□□ 0.5
USP49-203ENST00000394253 NBR1Q14596 966 aa18.14■□□□□ 0.49
USP49-203ENST00000394253 ARXQ96QS3 562 aa18.06■□□□□ 0.48
USP49-203ENST00000394253 ACIN1Q9UKV3 1341 aaKnown RBP18.05■□□□□ 0.48
USP49-203ENST00000394253 ERICH6BQ5W0A0 696 aa18.04■□□□□ 0.48
USP49-203ENST00000394253 GOLGA6L22H0YM25 854 aa18.01■□□□□ 0.47
USP49-203ENST00000394253 DNTTIP2Q5QJE6 756 aaKnown RBP17.99■□□□□ 0.47
USP49-203ENST00000394253 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.98■□□□□ 0.47
USP49-203ENST00000394253 BECN1Q14457 450 aa17.98■□□□□ 0.47
USP49-203ENST00000394253 ZRSR1Q15695 479 aaKnown RBP17.96■□□□□ 0.47
USP49-203ENST00000394253 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
USP49-203ENST00000394253 FAM50AQ14320 339 aaKnown RBP17.94■□□□□ 0.46
USP49-203ENST00000394253 DDRGK1Q96HY6 314 aa17.94■□□□□ 0.46
USP49-203ENST00000394253 NEUROD1Q13562 356 aa17.93■□□□□ 0.46
USP49-203ENST00000394253 PTMAP06454 111 aaKnown RBP17.92■□□□□ 0.46
USP49-203ENST00000394253 ZNF326Q5BKZ1 582 aaKnown RBP17.88■□□□□ 0.45
USP49-203ENST00000394253 NAP1L5Q96NT1 182 aaPredicted RBP17.88■□□□□ 0.45
USP49-203ENST00000394253 GOLGA6L6A8MZA4 724 aa17.88■□□□□ 0.45
USP49-203ENST00000394253 FKBP8Q14318 412 aa17.86■□□□□ 0.45
USP49-203ENST00000394253 CHAF1AQ13111 956 aaPredicted RBP17.86■□□□□ 0.45
USP49-203ENST00000394253 CCDC136Q96JN2 1154 aa17.85■□□□□ 0.45
USP49-203ENST00000394253 MYH16Q9H6N6 1097 aa17.85■□□□□ 0.45
USP49-203ENST00000394253 NRDCO43847 1150 aa17.83■□□□□ 0.44
USP49-203ENST00000394253 L1TD1Q5T7N2 865 aaKnown RBP17.75■□□□□ 0.43
USP49-203ENST00000394253 CALRP27797 417 aaKnown RBP17.68■□□□□ 0.42
USP49-203ENST00000394253 TNNT3P45378 269 aaPredicted RBP17.68■□□□□ 0.42
USP49-203ENST00000394253 CASC1Q6TDU7 716 aa17.67■□□□□ 0.42
USP49-203ENST00000394253 HNRNPUQ00839 825 aaKnown RBP eCLIP17.66■□□□□ 0.42
USP49-203ENST00000394253 AMER1Q5JTC6 1135 aaPredicted RBP17.66■□□□□ 0.42
USP49-203ENST00000394253 PPM1GO15355 546 aaPredicted RBP17.62■□□□□ 0.41
USP49-203ENST00000394253 LOC105371045A0A1W2PR82 267 aa17.61■□□□□ 0.41
USP49-203ENST00000394253 MSNP26038 577 aaKnown RBP17.61■□□□□ 0.41
USP49-203ENST00000394253 USP35Q9P2H5 1018 aa17.54■□□□□ 0.4
USP49-203ENST00000394253 TMC1Q8TDI8 760 aa17.52■□□□□ 0.39
USP49-203ENST00000394253 WDR43Q15061 677 aaKnown RBP eCLIP17.51■□□□□ 0.39
USP49-203ENST00000394253 PTMSP20962 102 aa17.5■□□□□ 0.39
USP49-203ENST00000394253 TONSLQ96HA7 1378 aa17.49■□□□□ 0.39
USP49-203ENST00000394253 KIAA2012Q0VF49 1180 aa17.48■□□□□ 0.39
USP49-203ENST00000394253 NOC3LQ8WTT2 800 aaKnown RBP17.47■□□□□ 0.39
USP49-203ENST00000394253 SETQ01105 290 aaPredicted RBP17.47■□□□□ 0.39
USP49-203ENST00000394253 FAM9BQ8IZU0 186 aa17.47■□□□□ 0.39
USP49-203ENST00000394253 GOLGA6L1Q8N7Z2 621 aa17.46■□□□□ 0.39
USP49-203ENST00000394253 RTN4Q9NQC3 1192 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms