RNA–Protein interactions for RNA: ENST00000440556.1

LINC02048-201, Transcript of long intergenic non-protein coding RNA 2048, humanhuman

TSL 5 BASIC

Gene LINC02048, Length 1,771 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02048-201ENST00000440556 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
LINC02048-201ENST00000440556 HRCP23327 699 aa23.24■■□□□ 1.31
LINC02048-201ENST00000440556 PELP1Q8IZL8 1130 aaKnown RBP23.22■■□□□ 1.31
LINC02048-201ENST00000440556 MYT1Q01538 1121 aa22.56■■□□□ 1.2
LINC02048-201ENST00000440556 CCDC180Q9P1Z9 1646 aa22.41■■□□□ 1.18
LINC02048-201ENST00000440556 PCGF6Q9BYE7 350 aa22.38■■□□□ 1.17
LINC02048-201ENST00000440556 PPARGC1BQ86YN6 1023 aaKnown RBP22.31■■□□□ 1.16
LINC02048-201ENST00000440556 DCAF1Q9Y4B6 1507 aa22.26■■□□□ 1.15
LINC02048-201ENST00000440556 MYO15BQ96JP2 1530 aa22.22■■□□□ 1.15
LINC02048-201ENST00000440556 SUPT5HO00267 1087 aaKnown RBP22.13■■□□□ 1.13
LINC02048-201ENST00000440556 CHIC1Q5VXU3 224 aa22.12■■□□□ 1.13
LINC02048-201ENST00000440556 ZEB1P37275 1124 aaPredicted RBP22.08■■□□□ 1.13
LINC02048-201ENST00000440556 SHROOM4Q9ULL8 1493 aa22.03■■□□□ 1.12
LINC02048-201ENST00000440556 ZCCHC6Q5VYS8 1495 aaKnown RBP21.99■■□□□ 1.11
LINC02048-201ENST00000440556 SCAF1Q9H7N4 1312 aaKnown RBP21.95■■□□□ 1.1
LINC02048-201ENST00000440556 TRIM26Q12899 539 aaPredicted RBP21.92■■□□□ 1.1
LINC02048-201ENST00000440556 ABCC9O60706 1549 aa21.73■■□□□ 1.07
LINC02048-201ENST00000440556 ACIN1Q9UKV3 1341 aaKnown RBP21.52■■□□□ 1.04
LINC02048-201ENST00000440556 DCAF8L2P0C7V8 631 aa21.47■■□□□ 1.03
LINC02048-201ENST00000440556 LOC105371045A0A1W2PR82 267 aa21.37■■□□□ 1.01
LINC02048-201ENST00000440556 CENPBP07199 599 aaPredicted RBP21.36■■□□□ 1.01
LINC02048-201ENST00000440556 TTBK1Q5TCY1 1321 aaPredicted RBP21.31■■□□□ 1
LINC02048-201ENST00000440556 NEUROD1Q13562 356 aa21.25■□□□□ 0.99
LINC02048-201ENST00000440556 GTF3C3Q9Y5Q9 886 aa21.2■□□□□ 0.99
LINC02048-201ENST00000440556 NACADO15069 1562 aa20.98■□□□□ 0.95
LINC02048-201ENST00000440556 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
LINC02048-201ENST00000440556 RB1CC1Q8TDY2 1594 aa20.89■□□□□ 0.94
LINC02048-201ENST00000440556 CCER1Q8TC90 406 aaPredicted RBP20.77■□□□□ 0.91
LINC02048-201ENST00000440556 SCRIBQ14160 1630 aa20.72■□□□□ 0.91
LINC02048-201ENST00000440556 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
LINC02048-201ENST00000440556 CLSPNQ9HAW4 1339 aa20.69■□□□□ 0.9
LINC02048-201ENST00000440556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.62■□□□□ 0.89
LINC02048-201ENST00000440556 ZNF316A6NFI3 1004 aaPredicted RBP20.59■□□□□ 0.89
LINC02048-201ENST00000440556 UNC13AQ9UPW8 1703 aa20.51■□□□□ 0.87
LINC02048-201ENST00000440556 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
LINC02048-201ENST00000440556 ANP32EQ9BTT0 268 aa20.48■□□□□ 0.87
LINC02048-201ENST00000440556 BCL11AQ9H165 835 aa20.47■□□□□ 0.87
LINC02048-201ENST00000440556 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
LINC02048-201ENST00000440556 WRNQ14191 1432 aaPredicted RBP eCLIP20.37■□□□□ 0.85
LINC02048-201ENST00000440556 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
LINC02048-201ENST00000440556 FAM9AQ8IZU1 332 aaPredicted RBP20.36■□□□□ 0.85
LINC02048-201ENST00000440556 YTHDC1Q96MU7 727 aaKnown RBP20.35■□□□□ 0.85
LINC02048-201ENST00000440556 MIER1Q8N108 512 aa20.29■□□□□ 0.84
LINC02048-201ENST00000440556 SUPT16HQ9Y5B9 1047 aaKnown RBP20.2■□□□□ 0.82
LINC02048-201ENST00000440556 TSHZ2Q9NRE2 1034 aa20.18■□□□□ 0.82
LINC02048-201ENST00000440556 CECR2Q9BXF3 1484 aa20.09■□□□□ 0.81
LINC02048-201ENST00000440556 CSRNP3Q8WYN3 585 aa20.05■□□□□ 0.8
LINC02048-201ENST00000440556 BAZ1AQ9NRL2 1556 aaPredicted RBP20.04■□□□□ 0.8
LINC02048-201ENST00000440556 EHMT2Q96KQ7 1210 aa20.02■□□□□ 0.8
LINC02048-201ENST00000440556 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
LINC02048-201ENST00000440556 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
LINC02048-201ENST00000440556 TNIKQ9UKE5 1360 aa19.96■□□□□ 0.79
LINC02048-201ENST00000440556 WIZO95785 1651 aa19.89■□□□□ 0.77
LINC02048-201ENST00000440556 EIF4G1Q04637 1599 aaKnown RBP19.88■□□□□ 0.77
LINC02048-201ENST00000440556 EEA1Q15075 1411 aa19.85■□□□□ 0.77
LINC02048-201ENST00000440556 ERICH6Q7L0X2 663 aa19.84■□□□□ 0.77
LINC02048-201ENST00000440556 TOP2AP11388 1531 aaKnown RBP19.82■□□□□ 0.76
LINC02048-201ENST00000440556 MYT1LQ9UL68 1186 aa19.8■□□□□ 0.76
LINC02048-201ENST00000440556 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
LINC02048-201ENST00000440556 PRKCSHP14314 528 aaPredicted RBP19.76■□□□□ 0.75
LINC02048-201ENST00000440556 RBM19Q9Y4C8 960 aaKnown RBP19.69■□□□□ 0.74
LINC02048-201ENST00000440556 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
LINC02048-201ENST00000440556 DNAJC5BQ9UF47 199 aa19.63■□□□□ 0.73
LINC02048-201ENST00000440556 HNRNPUL2Q1KMD3 747 aaKnown RBP19.62■□□□□ 0.73
LINC02048-201ENST00000440556 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
LINC02048-201ENST00000440556 FANCIQ9NVI1 1328 aa19.59■□□□□ 0.73
LINC02048-201ENST00000440556 NEFLP07196 543 aa19.59■□□□□ 0.73
LINC02048-201ENST00000440556 ATAD2BQ9ULI0 1458 aa19.58■□□□□ 0.73
LINC02048-201ENST00000440556 CC2D2AQ9P2K1 1620 aa19.58■□□□□ 0.72
LINC02048-201ENST00000440556 SMARCA2P51531 1590 aa19.58■□□□□ 0.72
LINC02048-201ENST00000440556 CCDC88BA6NC98 1476 aa19.57■□□□□ 0.72
LINC02048-201ENST00000440556 FKBP8Q14318 412 aa19.55■□□□□ 0.72
LINC02048-201ENST00000440556 ABCC8Q09428 1581 aa19.55■□□□□ 0.72
LINC02048-201ENST00000440556 UBTFP17480 764 aaKnown RBP19.52■□□□□ 0.72
LINC02048-201ENST00000440556 DHX57Q6P158 1386 aaKnown RBP19.52■□□□□ 0.72
LINC02048-201ENST00000440556 SOGA1O94964 1423 aa19.49■□□□□ 0.71
LINC02048-201ENST00000440556 VPS8Q8N3P4 1428 aa19.49■□□□□ 0.71
LINC02048-201ENST00000440556 KIF21BO75037 1637 aa19.48■□□□□ 0.71
LINC02048-201ENST00000440556 CEP164Q9UPV0 1460 aa19.45■□□□□ 0.7
LINC02048-201ENST00000440556 APLP2Q06481 763 aa19.44■□□□□ 0.7
LINC02048-201ENST00000440556 BCANQ96GW7 911 aa19.44■□□□□ 0.7
LINC02048-201ENST00000440556 MSH5O43196 834 aa19.43■□□□□ 0.7
LINC02048-201ENST00000440556 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
LINC02048-201ENST00000440556 BAZ1BQ9UIG0 1483 aaKnown RBP19.42■□□□□ 0.7
LINC02048-201ENST00000440556 CLIP1P30622 1438 aa19.4■□□□□ 0.7
LINC02048-201ENST00000440556 CUX2O14529 1486 aa19.36■□□□□ 0.69
LINC02048-201ENST00000440556 ERICH6BQ5W0A0 696 aa19.36■□□□□ 0.69
LINC02048-201ENST00000440556 CCER2I3L3R5 266 aa19.34■□□□□ 0.69
LINC02048-201ENST00000440556 CDK11AQ9UQ88 783 aaPredicted RBP19.33■□□□□ 0.68
LINC02048-201ENST00000440556 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
LINC02048-201ENST00000440556 RUSC2Q8N2Y8 1516 aa19.3■□□□□ 0.68
LINC02048-201ENST00000440556 DEKP35659 375 aaKnown RBP19.29■□□□□ 0.68
LINC02048-201ENST00000440556 KCNH8Q96L42 1107 aa19.24■□□□□ 0.67
LINC02048-201ENST00000440556 RRBP1Q9P2E9 1410 aaKnown RBP19.22■□□□□ 0.67
LINC02048-201ENST00000440556 ITGAEP38570 1179 aa19.18■□□□□ 0.66
LINC02048-201ENST00000440556 TIMELESSQ9UNS1 1208 aa19.16■□□□□ 0.66
LINC02048-201ENST00000440556 PPP1R15AO75807 674 aaPredicted RBP19.14■□□□□ 0.65
LINC02048-201ENST00000440556 ANP32CO43423 234 aa19.12■□□□□ 0.65
LINC02048-201ENST00000440556 DDX10Q13206 875 aaKnown RBP19.09■□□□□ 0.65
LINC02048-201ENST00000440556 PPP4R2Q9NY27 417 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms