RNA–Protein interactions for RNA: ENST00000604859.1

NEK4P3-201, Transcript of NIMA-related kinase 4 pseudogene 3, humanhuman

BASIC

Gene NEK4P3, Length 544 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4P3-201ENST00000604859 NISCHQ9Y2I1 1504 aa32.31■■■□□ 2.76
NEK4P3-201ENST00000604859 ABCC9O60706 1549 aa29.17■■■□□ 2.26
NEK4P3-201ENST00000604859 CCDC180Q9P1Z9 1646 aa29.03■■■□□ 2.24
NEK4P3-201ENST00000604859 RB1CC1Q8TDY2 1594 aa27.72■■■□□ 2.03
NEK4P3-201ENST00000604859 DNAJC5BQ9UF47 199 aa27.52■■■□□ 2
NEK4P3-201ENST00000604859 NACADO15069 1562 aa27.5■■□□□ 1.99
NEK4P3-201ENST00000604859 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
NEK4P3-201ENST00000604859 PABPN1Q86U42 306 aaKnown RBP eCLIP27.18■■□□□ 1.94
NEK4P3-201ENST00000604859 UNC13AQ9UPW8 1703 aa27.1■■□□□ 1.93
NEK4P3-201ENST00000604859 MYO15BQ96JP2 1530 aa27.07■■□□□ 1.92
NEK4P3-201ENST00000604859 BICRAQ9NZM4 1560 aa26.9■■□□□ 1.9
NEK4P3-201ENST00000604859 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
NEK4P3-201ENST00000604859 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
NEK4P3-201ENST00000604859 SHROOM4Q9ULL8 1493 aa26.51■■□□□ 1.83
NEK4P3-201ENST00000604859 SCRIBQ14160 1630 aa26.44■■□□□ 1.82
NEK4P3-201ENST00000604859 CC2D2AQ9P2K1 1620 aa26.35■■□□□ 1.81
NEK4P3-201ENST00000604859 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
NEK4P3-201ENST00000604859 EIF4G1Q04637 1599 aaKnown RBP26.25■■□□□ 1.79
NEK4P3-201ENST00000604859 NCAPD3P42695 1498 aa25.4■■□□□ 1.66
NEK4P3-201ENST00000604859 DNAJC5Q9H3Z4 198 aa25.39■■□□□ 1.66
NEK4P3-201ENST00000604859 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
NEK4P3-201ENST00000604859 SMARCA4P51532 1647 aa25.22■■□□□ 1.63
NEK4P3-201ENST00000604859 SMARCA2P51531 1590 aa25.21■■□□□ 1.63
NEK4P3-201ENST00000604859 ERCC6Q03468 1493 aa25.21■■□□□ 1.63
NEK4P3-201ENST00000604859 CUX2O14529 1486 aa25.2■■□□□ 1.62
NEK4P3-201ENST00000604859 HMGXB3Q12766 1538 aa25.17■■□□□ 1.62
NEK4P3-201ENST00000604859 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
NEK4P3-201ENST00000604859 BAZ1BQ9UIG0 1483 aaKnown RBP25.03■■□□□ 1.6
NEK4P3-201ENST00000604859 NESP48681 1621 aa25.02■■□□□ 1.6
NEK4P3-201ENST00000604859 PEG3Q9GZU2 1588 aa24.98■■□□□ 1.59
NEK4P3-201ENST00000604859 MROH2BQ7Z745 1585 aa24.89■■□□□ 1.58
NEK4P3-201ENST00000604859 LAMC3Q9Y6N6 1575 aa24.84■■□□□ 1.57
NEK4P3-201ENST00000604859 THOC2Q8NI27 1593 aaKnown RBP24.76■■□□□ 1.55
NEK4P3-201ENST00000604859 PDS5BQ9NTI5 1447 aa24.71■■□□□ 1.55
NEK4P3-201ENST00000604859 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
NEK4P3-201ENST00000604859 CADPSQ9ULU8 1353 aa24.63■■□□□ 1.53
NEK4P3-201ENST00000604859 WIZO95785 1651 aa24.6■■□□□ 1.53
NEK4P3-201ENST00000604859 MRC2Q9UBG0 1479 aa24.47■■□□□ 1.51
NEK4P3-201ENST00000604859 WDR62O43379 1518 aa24.4■■□□□ 1.5
NEK4P3-201ENST00000604859 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
NEK4P3-201ENST00000604859 RSF1Q96T23 1441 aaPredicted RBP24.34■■□□□ 1.49
NEK4P3-201ENST00000604859 FANCD2Q9BXW9 1451 aa24.33■■□□□ 1.49
NEK4P3-201ENST00000604859 CFTRP13569 1480 aa24.31■■□□□ 1.48
NEK4P3-201ENST00000604859 TOP2AP11388 1531 aaKnown RBP24.25■■□□□ 1.47
NEK4P3-201ENST00000604859 TRIM41Q8WV44 630 aa24.2■■□□□ 1.46
NEK4P3-201ENST00000604859 URB2Q14146 1524 aaKnown RBP24.13■■□□□ 1.45
NEK4P3-201ENST00000604859 OSCARQ8IYS5 282 aa24.09■■□□□ 1.45
NEK4P3-201ENST00000604859 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
NEK4P3-201ENST00000604859 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
NEK4P3-201ENST00000604859 IFT140Q96RY7 1462 aa23.88■■□□□ 1.41
NEK4P3-201ENST00000604859 ZNF608Q9ULD9 1512 aaPredicted RBP23.86■■□□□ 1.41
NEK4P3-201ENST00000604859 TOPBP1Q92547 1522 aa23.85■■□□□ 1.41
NEK4P3-201ENST00000604859 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
NEK4P3-201ENST00000604859 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
NEK4P3-201ENST00000604859 RIMBP3CA6NJZ7 1639 aa23.73■■□□□ 1.39
NEK4P3-201ENST00000604859 RIMBP3BA6NNM3 1639 aa23.73■■□□□ 1.39
NEK4P3-201ENST00000604859 RIMBP3Q9UFD9 1639 aa23.73■■□□□ 1.39
NEK4P3-201ENST00000604859 EIF4G3O43432 1585 aaKnown RBP23.69■■□□□ 1.38
NEK4P3-201ENST00000604859 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
NEK4P3-201ENST00000604859 AQRO60306 1485 aaKnown RBP eCLIP23.64■■□□□ 1.38
NEK4P3-201ENST00000604859 ARHGEF11O15085 1522 aa23.64■■□□□ 1.37
NEK4P3-201ENST00000604859 POLA1P09884 1462 aaPredicted RBP23.6■■□□□ 1.37
NEK4P3-201ENST00000604859 CHD1O14646 1710 aa23.56■■□□□ 1.36
NEK4P3-201ENST00000604859 FBLN2P98095 1184 aa23.55■■□□□ 1.36
NEK4P3-201ENST00000604859 CYB5RLQ6IPT4 315 aa23.53■■□□□ 1.36
NEK4P3-201ENST00000604859 SOGA1O94964 1423 aa23.52■■□□□ 1.36
NEK4P3-201ENST00000604859 RAD54L2Q9Y4B4 1467 aa23.52■■□□□ 1.36
NEK4P3-201ENST00000604859 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
NEK4P3-201ENST00000604859 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
NEK4P3-201ENST00000604859 WDR97A6NE52 1622 aa23.39■■□□□ 1.33
NEK4P3-201ENST00000604859 CUX1P39880 1505 aa23.38■■□□□ 1.33
NEK4P3-201ENST00000604859 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
NEK4P3-201ENST00000604859 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
NEK4P3-201ENST00000604859 CHMP7Q8WUX9 453 aaPredicted RBP23.36■■□□□ 1.33
NEK4P3-201ENST00000604859 MAGI1Q96QZ7 1491 aaPredicted RBP23.31■■□□□ 1.32
NEK4P3-201ENST00000604859 TRHP20396 242 aaPredicted RBP23.31■■□□□ 1.32
NEK4P3-201ENST00000604859 GRIN2BQ13224 1484 aa23.3■■□□□ 1.32
NEK4P3-201ENST00000604859 CLASP1Q7Z460 1538 aa23.28■■□□□ 1.32
NEK4P3-201ENST00000604859 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
NEK4P3-201ENST00000604859 SYNJ2O15056 1496 aa23.24■■□□□ 1.31
NEK4P3-201ENST00000604859 SUPT5HO00267 1087 aaKnown RBP23.22■■□□□ 1.31
NEK4P3-201ENST00000604859 GAPVD1Q14C86 1478 aa23.22■■□□□ 1.31
NEK4P3-201ENST00000604859 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
NEK4P3-201ENST00000604859 ABCA10Q8WWZ4 1543 aa23.16■■□□□ 1.3
NEK4P3-201ENST00000604859 ABCA5Q8WWZ7 1642 aa23.11■■□□□ 1.29
NEK4P3-201ENST00000604859 WRNQ14191 1432 aaPredicted RBP eCLIP23.07■■□□□ 1.28
NEK4P3-201ENST00000604859 GRIN2AQ12879 1464 aa22.99■■□□□ 1.27
NEK4P3-201ENST00000604859 TOP2BQ02880 1626 aa22.99■■□□□ 1.27
NEK4P3-201ENST00000604859 BIVM-ERCC5R4GMW8 1640 aa22.98■■□□□ 1.27
NEK4P3-201ENST00000604859 ADAMTS12P58397 1594 aa22.93■■□□□ 1.26
NEK4P3-201ENST00000604859 NUP160Q12769 1436 aa22.92■■□□□ 1.26
NEK4P3-201ENST00000604859 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
NEK4P3-201ENST00000604859 CEP170Q5SW79 1584 aa22.91■■□□□ 1.26
NEK4P3-201ENST00000604859 ERCC6L2Q5T890 1561 aa22.91■■□□□ 1.26
NEK4P3-201ENST00000604859 ERICH3Q5RHP9 1530 aa22.87■■□□□ 1.25
NEK4P3-201ENST00000604859 SHROOM2Q13796 1616 aa22.83■■□□□ 1.25
NEK4P3-201ENST00000604859 JPH4Q96JJ6 628 aa22.76■■□□□ 1.23
NEK4P3-201ENST00000604859 PRG4Q92954 1404 aaPredicted RBP22.74■■□□□ 1.23
NEK4P3-201ENST00000604859 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
NEK4P3-201ENST00000604859 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms