Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGB1P09429 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HMGB1P09429 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 AC092573.1-201ENST00000433054 884 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGB1P09429 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGB1P09429 GRPEL2P1-201ENST00000453145 339 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGB1P09429 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
HMGB1P09429 AP005264.5-201ENST00000590066 467 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGB1P09429 AF254983.2-201ENST00000612331 135 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 AC009145.4-201ENST00000625119 1294 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 AC006453.1-201ENST00000636037 1257 ntBASIC16.36■□□□□ 0.21
HMGB1P09429 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGB1P09429 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 ALDH8A1-203ENST00000367845 2383 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
HMGB1P09429 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 TUBB2BP1-201ENST00000404155 871 ntBASIC16.35■□□□□ 0.21
HMGB1P09429 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 AL592076.1-201ENST00000424448 303 ntBASIC16.35■□□□□ 0.21
HMGB1P09429 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB1P09429 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.35■□□□□ 0.21
HMGB1P09429 AC012044.1-201ENST00000603431 297 ntBASIC16.35■□□□□ 0.21
HMGB1P09429 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC16.35■□□□□ 0.21
HMGB1P09429 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB1P09429 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB1P09429 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB1P09429 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms