RNA–Protein interactions for RNA: ENST00000506542.1

SERF1B-204, Transcript of small EDRK-rich factor 1B, humanhuman

TSL 3 BASIC

Gene SERF1B, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SERF1B-204ENST00000506542 NISCHQ9Y2I1 1504 aa33.25■■■□□ 2.91
SERF1B-204ENST00000506542 CCDC180Q9P1Z9 1646 aa29.51■■■□□ 2.31
SERF1B-204ENST00000506542 ABCC9O60706 1549 aa29.06■■■□□ 2.24
SERF1B-204ENST00000506542 DCAF8L2P0C7V8 631 aa27.92■■■□□ 2.06
SERF1B-204ENST00000506542 RB1CC1Q8TDY2 1594 aa27.79■■■□□ 2.04
SERF1B-204ENST00000506542 NACADO15069 1562 aa27.72■■■□□ 2.03
SERF1B-204ENST00000506542 ZCCHC6Q5VYS8 1495 aaKnown RBP27.69■■■□□ 2.02
SERF1B-204ENST00000506542 MYO15BQ96JP2 1530 aa27.47■■□□□ 1.99
SERF1B-204ENST00000506542 DCAF1Q9Y4B6 1507 aa27.38■■□□□ 1.97
SERF1B-204ENST00000506542 UNC13AQ9UPW8 1703 aa27.35■■□□□ 1.97
SERF1B-204ENST00000506542 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
SERF1B-204ENST00000506542 SCRIBQ14160 1630 aa27.1■■□□□ 1.93
SERF1B-204ENST00000506542 BICRAQ9NZM4 1560 aa27.07■■□□□ 1.92
SERF1B-204ENST00000506542 DNAJC5BQ9UF47 199 aa26.76■■□□□ 1.87
SERF1B-204ENST00000506542 SHROOM4Q9ULL8 1493 aa26.52■■□□□ 1.84
SERF1B-204ENST00000506542 EIF4G1Q04637 1599 aaKnown RBP26.32■■□□□ 1.8
SERF1B-204ENST00000506542 CC2D2AQ9P2K1 1620 aa26.25■■□□□ 1.79
SERF1B-204ENST00000506542 CECR2Q9BXF3 1484 aa26.04■■□□□ 1.76
SERF1B-204ENST00000506542 SMARCA4P51532 1647 aa25.84■■□□□ 1.73
SERF1B-204ENST00000506542 BAZ1AQ9NRL2 1556 aaPredicted RBP25.73■■□□□ 1.71
SERF1B-204ENST00000506542 MROH2BQ7Z745 1585 aa25.71■■□□□ 1.71
SERF1B-204ENST00000506542 ATAD2BQ9ULI0 1458 aa25.67■■□□□ 1.7
SERF1B-204ENST00000506542 NCAPD3P42695 1498 aa25.6■■□□□ 1.69
SERF1B-204ENST00000506542 SMARCA2P51531 1590 aa25.57■■□□□ 1.68
SERF1B-204ENST00000506542 PEG3Q9GZU2 1588 aa25.49■■□□□ 1.67
SERF1B-204ENST00000506542 WIZO95785 1651 aa25.47■■□□□ 1.67
SERF1B-204ENST00000506542 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
SERF1B-204ENST00000506542 BAZ1BQ9UIG0 1483 aaKnown RBP25.46■■□□□ 1.67
SERF1B-204ENST00000506542 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
SERF1B-204ENST00000506542 NESP48681 1621 aa25.19■■□□□ 1.62
SERF1B-204ENST00000506542 TOP2AP11388 1531 aaKnown RBP25.07■■□□□ 1.6
SERF1B-204ENST00000506542 ERCC6Q03468 1493 aa24.97■■□□□ 1.59
SERF1B-204ENST00000506542 LAMC3Q9Y6N6 1575 aa24.93■■□□□ 1.58
SERF1B-204ENST00000506542 CADPSQ9ULU8 1353 aa24.87■■□□□ 1.57
SERF1B-204ENST00000506542 KIF21AQ7Z4S6 1674 aa24.87■■□□□ 1.57
SERF1B-204ENST00000506542 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.57
SERF1B-204ENST00000506542 SUPT5HO00267 1087 aaKnown RBP24.81■■□□□ 1.56
SERF1B-204ENST00000506542 PDS5BQ9NTI5 1447 aa24.74■■□□□ 1.55
SERF1B-204ENST00000506542 THOC2Q8NI27 1593 aaKnown RBP24.73■■□□□ 1.55
SERF1B-204ENST00000506542 CFTRP13569 1480 aa24.73■■□□□ 1.55
SERF1B-204ENST00000506542 FANCD2Q9BXW9 1451 aa24.63■■□□□ 1.53
SERF1B-204ENST00000506542 CUX2O14529 1486 aa24.62■■□□□ 1.53
SERF1B-204ENST00000506542 PRDM2Q13029 1718 aa24.59■■□□□ 1.53
SERF1B-204ENST00000506542 CEP164Q9UPV0 1460 aa24.58■■□□□ 1.52
SERF1B-204ENST00000506542 MRC2Q9UBG0 1479 aa24.54■■□□□ 1.52
SERF1B-204ENST00000506542 WDR62O43379 1518 aa24.47■■□□□ 1.51
SERF1B-204ENST00000506542 URB2Q14146 1524 aaKnown RBP24.44■■□□□ 1.5
SERF1B-204ENST00000506542 TOPBP1Q92547 1522 aa24.25■■□□□ 1.47
SERF1B-204ENST00000506542 DNMBPQ6XZF7 1577 aa24.19■■□□□ 1.46
SERF1B-204ENST00000506542 CUX1P39880 1505 aa24.11■■□□□ 1.45
SERF1B-204ENST00000506542 ABCC8Q09428 1581 aa24.09■■□□□ 1.45
SERF1B-204ENST00000506542 ZNF608Q9ULD9 1512 aaPredicted RBP24.08■■□□□ 1.44
SERF1B-204ENST00000506542 POLA1P09884 1462 aaPredicted RBP24.05■■□□□ 1.44
SERF1B-204ENST00000506542 IFT140Q96RY7 1462 aa24.03■■□□□ 1.44
SERF1B-204ENST00000506542 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
SERF1B-204ENST00000506542 TARBP1Q13395 1621 aaKnown RBP24.01■■□□□ 1.43
SERF1B-204ENST00000506542 FGD5Q6ZNL6 1462 aa24■■□□□ 1.43
SERF1B-204ENST00000506542 DNAJC5Q9H3Z4 198 aa23.95■■□□□ 1.42
SERF1B-204ENST00000506542 EIF4G3O43432 1585 aaKnown RBP23.94■■□□□ 1.42
SERF1B-204ENST00000506542 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
SERF1B-204ENST00000506542 SOGA1O94964 1423 aa23.92■■□□□ 1.42
SERF1B-204ENST00000506542 AQRO60306 1485 aaKnown RBP eCLIP23.92■■□□□ 1.42
SERF1B-204ENST00000506542 WRNQ14191 1432 aaPredicted RBP eCLIP23.88■■□□□ 1.41
SERF1B-204ENST00000506542 TDRD9Q8NDG6 1382 aaKnown RBP23.86■■□□□ 1.41
SERF1B-204ENST00000506542 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
SERF1B-204ENST00000506542 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
SERF1B-204ENST00000506542 WDR97A6NE52 1622 aa23.82■■□□□ 1.4
SERF1B-204ENST00000506542 ABCA10Q8WWZ4 1543 aa23.7■■□□□ 1.38
SERF1B-204ENST00000506542 CHD1O14646 1710 aa23.69■■□□□ 1.38
SERF1B-204ENST00000506542 PBRM1Q86U86 1689 aa23.67■■□□□ 1.38
SERF1B-204ENST00000506542 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
SERF1B-204ENST00000506542 SNAPC4Q5SXM2 1469 aa23.66■■□□□ 1.38
SERF1B-204ENST00000506542 GAPVD1Q14C86 1478 aa23.65■■□□□ 1.38
SERF1B-204ENST00000506542 FBLN2P98095 1184 aa23.64■■□□□ 1.37
SERF1B-204ENST00000506542 OSCARQ8IYS5 282 aa23.64■■□□□ 1.37
SERF1B-204ENST00000506542 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
SERF1B-204ENST00000506542 MAGI1Q96QZ7 1491 aaPredicted RBP23.53■■□□□ 1.36
SERF1B-204ENST00000506542 CHMP7Q8WUX9 453 aaPredicted RBP23.48■■□□□ 1.35
SERF1B-204ENST00000506542 SYNJ2O15056 1496 aa23.46■■□□□ 1.35
SERF1B-204ENST00000506542 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
SERF1B-204ENST00000506542 ADAMTS12P58397 1594 aa23.44■■□□□ 1.34
SERF1B-204ENST00000506542 ERICH3Q5RHP9 1530 aa23.39■■□□□ 1.34
SERF1B-204ENST00000506542 RIMBP3CA6NJZ7 1639 aa23.36■■□□□ 1.33
SERF1B-204ENST00000506542 RIMBP3BA6NNM3 1639 aa23.36■■□□□ 1.33
SERF1B-204ENST00000506542 RIMBP3Q9UFD9 1639 aa23.36■■□□□ 1.33
SERF1B-204ENST00000506542 GRIN2AQ12879 1464 aa23.35■■□□□ 1.33
SERF1B-204ENST00000506542 CLASP1Q7Z460 1538 aa23.34■■□□□ 1.33
SERF1B-204ENST00000506542 KIF27Q86VH2 1401 aa23.33■■□□□ 1.33
SERF1B-204ENST00000506542 FHAD1B1AJZ9 1412 aa23.33■■□□□ 1.32
SERF1B-204ENST00000506542 ARHGEF11O15085 1522 aa23.32■■□□□ 1.32
SERF1B-204ENST00000506542 RUSC2Q8N2Y8 1516 aa23.32■■□□□ 1.32
SERF1B-204ENST00000506542 TRIM41Q8WV44 630 aa23.32■■□□□ 1.32
SERF1B-204ENST00000506542 IGF1RP08069 1367 aa23.3■■□□□ 1.32
SERF1B-204ENST00000506542 CEP170Q5SW79 1584 aa23.3■■□□□ 1.32
SERF1B-204ENST00000506542 NUP160Q12769 1436 aa23.21■■□□□ 1.31
SERF1B-204ENST00000506542 CUL7Q14999 1698 aa23.2■■□□□ 1.3
SERF1B-204ENST00000506542 ERCC6L2Q5T890 1561 aa23.16■■□□□ 1.3
SERF1B-204ENST00000506542 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
SERF1B-204ENST00000506542 CARMIL1Q5VZK9 1371 aa23.14■■□□□ 1.3
SERF1B-204ENST00000506542 CYB5RLQ6IPT4 315 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms