Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
RTCBQ9Y3I0 AL133380.1-201ENST00000506013 324 ntBASIC36.21■■■■□ 3.39
RTCBQ9Y3I0 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
RTCBQ9Y3I0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
RTCBQ9Y3I0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC36.18■■■■□ 3.38
RTCBQ9Y3I0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
RTCBQ9Y3I0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC36.16■■■■□ 3.38
RTCBQ9Y3I0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC36.16■■■■□ 3.38
RTCBQ9Y3I0 HNRNPLP2-201ENST00000568980 1570 ntBASIC36.13■■■■□ 3.37
RTCBQ9Y3I0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
RTCBQ9Y3I0 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
RTCBQ9Y3I0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
RTCBQ9Y3I0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC36.02■■■■□ 3.36
RTCBQ9Y3I0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC36.02■■■■□ 3.36
RTCBQ9Y3I0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC36.01■■■■□ 3.36
RTCBQ9Y3I0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC36.01■■■■□ 3.36
RTCBQ9Y3I0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC36■■■■□ 3.35
RTCBQ9Y3I0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC36■■■■□ 3.35
RTCBQ9Y3I0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.98■■■■□ 3.35
RTCBQ9Y3I0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.97■■■■□ 3.35
RTCBQ9Y3I0 MIR3665-201ENST00000578708 105 ntBASIC35.97■■■■□ 3.35
RTCBQ9Y3I0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.95■■■■□ 3.35
RTCBQ9Y3I0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.94■■■■□ 3.34
RTCBQ9Y3I0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.94■■■■□ 3.34
RTCBQ9Y3I0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
RTCBQ9Y3I0 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
RTCBQ9Y3I0 ABHD17AP4-201ENST00000411545 909 ntBASIC35.91■■■■□ 3.34
RTCBQ9Y3I0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
RTCBQ9Y3I0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.9■■■■□ 3.34
RTCBQ9Y3I0 MIR7108-201ENST00000614319 87 ntBASIC35.89■■■■□ 3.34
RTCBQ9Y3I0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.89■■■■□ 3.34
RTCBQ9Y3I0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
RTCBQ9Y3I0 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
RTCBQ9Y3I0 AC087741.3-201ENST00000624270 1347 ntBASIC35.83■■■■□ 3.33
RTCBQ9Y3I0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
RTCBQ9Y3I0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
RTCBQ9Y3I0 DUX4L28-201ENST00000623687 678 ntBASIC35.79■■■■□ 3.32
RTCBQ9Y3I0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.79■■■■□ 3.32
RTCBQ9Y3I0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.76■■■■□ 3.32
RTCBQ9Y3I0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.74■■■■□ 3.31
RTCBQ9Y3I0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
RTCBQ9Y3I0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.73■■■■□ 3.31
RTCBQ9Y3I0 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.73■■■■□ 3.31
RTCBQ9Y3I0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.71■■■■□ 3.31
RTCBQ9Y3I0 MIR762-201ENST00000390236 83 ntBASIC35.69■■■■□ 3.3
RTCBQ9Y3I0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.69■■■■□ 3.3
RTCBQ9Y3I0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
RTCBQ9Y3I0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RTCBQ9Y3I0 AC044849.2-201ENST00000606596 710 ntBASIC35.67■■■■□ 3.3
RTCBQ9Y3I0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.67■■■■□ 3.3
RTCBQ9Y3I0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
RTCBQ9Y3I0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.66■■■■□ 3.3
RTCBQ9Y3I0 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.63■■■■□ 3.29
RTCBQ9Y3I0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.63■■■■□ 3.29
RTCBQ9Y3I0 AC005559.1-201ENST00000589661 871 ntBASIC35.62■■■■□ 3.29
RTCBQ9Y3I0 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC35.61■■■■□ 3.29
RTCBQ9Y3I0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
RTCBQ9Y3I0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.56■■■■□ 3.28
RTCBQ9Y3I0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC35.56■■■■□ 3.28
RTCBQ9Y3I0 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
RTCBQ9Y3I0 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
RTCBQ9Y3I0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.55■■■■□ 3.28
RTCBQ9Y3I0 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
RTCBQ9Y3I0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.54■■■■□ 3.28
RTCBQ9Y3I0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.52■■■■□ 3.28
RTCBQ9Y3I0 HLA-V-202ENST00000446817 847 ntBASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.51■■■■□ 3.28
RTCBQ9Y3I0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
RTCBQ9Y3I0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
RTCBQ9Y3I0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.49■■■■□ 3.27
RTCBQ9Y3I0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.49■■■■□ 3.27
RTCBQ9Y3I0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
RTCBQ9Y3I0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
RTCBQ9Y3I0 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC35.45■■■■□ 3.27
RTCBQ9Y3I0 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
RTCBQ9Y3I0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
RTCBQ9Y3I0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.4■■■■□ 3.26
RTCBQ9Y3I0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.4■■■■□ 3.26
RTCBQ9Y3I0 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RTCBQ9Y3I0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.38■■■■□ 3.25
RTCBQ9Y3I0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.38■■■■□ 3.25
RTCBQ9Y3I0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.38■■■■□ 3.25
RTCBQ9Y3I0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.37■■■■□ 3.25
RTCBQ9Y3I0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
RTCBQ9Y3I0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.36■■■■□ 3.25
RTCBQ9Y3I0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.35■■■■□ 3.25
RTCBQ9Y3I0 ZNRF2P2-203ENST00000454624 420 ntBASIC35.35■■■■□ 3.25
RTCBQ9Y3I0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.35■■■■□ 3.25
RTCBQ9Y3I0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
RTCBQ9Y3I0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
RTCBQ9Y3I0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
RTCBQ9Y3I0 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.3■■■■□ 3.24
RTCBQ9Y3I0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.28■■■■□ 3.24
RTCBQ9Y3I0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC35.24■■■■□ 3.23
RTCBQ9Y3I0 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
RTCBQ9Y3I0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.23■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms