Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NOTCH3Q9UM47 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NOTCH3Q9UM47 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.45■■□□□ 1.02
NOTCH3Q9UM47 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.45■■□□□ 1.02
NOTCH3Q9UM47 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NOTCH3Q9UM47 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NOTCH3Q9UM47 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.44■■□□□ 1.02
NOTCH3Q9UM47 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NOTCH3Q9UM47 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NOTCH3Q9UM47 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NOTCH3Q9UM47 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NOTCH3Q9UM47 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NOTCH3Q9UM47 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.4■■□□□ 1.02
NOTCH3Q9UM47 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.38■■□□□ 1.01
NOTCH3Q9UM47 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NOTCH3Q9UM47 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NOTCH3Q9UM47 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.36■■□□□ 1.01
NOTCH3Q9UM47 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NOTCH3Q9UM47 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NOTCH3Q9UM47 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.33■■□□□ 1
NOTCH3Q9UM47 ABHD17AP4-201ENST00000411545 909 ntBASIC21.31■■□□□ 1
NOTCH3Q9UM47 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NOTCH3Q9UM47 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NOTCH3Q9UM47 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.3■■□□□ 1
NOTCH3Q9UM47 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NOTCH3Q9UM47 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.3■■□□□ 1
NOTCH3Q9UM47 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
NOTCH3Q9UM47 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NOTCH3Q9UM47 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.29■■□□□ 1
NOTCH3Q9UM47 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NOTCH3Q9UM47 MIR3665-201ENST00000578708 105 ntBASIC21.28■■□□□ 1
NOTCH3Q9UM47 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NOTCH3Q9UM47 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NOTCH3Q9UM47 AL133380.1-201ENST00000506013 324 ntBASIC21.27■□□□□ 0.99
NOTCH3Q9UM47 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.24■□□□□ 0.99
NOTCH3Q9UM47 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.23■□□□□ 0.99
NOTCH3Q9UM47 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NOTCH3Q9UM47 HLA-V-202ENST00000446817 847 ntBASIC21.22■□□□□ 0.99
NOTCH3Q9UM47 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.21■□□□□ 0.99
NOTCH3Q9UM47 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC21.21■□□□□ 0.99
NOTCH3Q9UM47 MIR7108-201ENST00000614319 87 ntBASIC21.21■□□□□ 0.99
NOTCH3Q9UM47 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.2■□□□□ 0.98
NOTCH3Q9UM47 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NOTCH3Q9UM47 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.18■□□□□ 0.98
NOTCH3Q9UM47 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.17■□□□□ 0.98
NOTCH3Q9UM47 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.17■□□□□ 0.98
NOTCH3Q9UM47 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NOTCH3Q9UM47 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOTCH3Q9UM47 MIR762-201ENST00000390236 83 ntBASIC21.15■□□□□ 0.98
NOTCH3Q9UM47 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOTCH3Q9UM47 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOTCH3Q9UM47 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
NOTCH3Q9UM47 AC087741.3-201ENST00000624270 1347 ntBASIC21.14■□□□□ 0.97
NOTCH3Q9UM47 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOTCH3Q9UM47 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NOTCH3Q9UM47 AC044849.2-201ENST00000606596 710 ntBASIC21.13■□□□□ 0.97
NOTCH3Q9UM47 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
NOTCH3Q9UM47 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NOTCH3Q9UM47 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.1■□□□□ 0.97
NOTCH3Q9UM47 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC21.1■□□□□ 0.97
NOTCH3Q9UM47 DUX4L28-201ENST00000623687 678 ntBASIC21.09■□□□□ 0.97
NOTCH3Q9UM47 AC005559.1-201ENST00000589661 871 ntBASIC21.07■□□□□ 0.96
NOTCH3Q9UM47 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.07■□□□□ 0.96
NOTCH3Q9UM47 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOTCH3Q9UM47 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOTCH3Q9UM47 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOTCH3Q9UM47 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.03■□□□□ 0.96
NOTCH3Q9UM47 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.03■□□□□ 0.96
NOTCH3Q9UM47 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NOTCH3Q9UM47 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NOTCH3Q9UM47 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21■□□□□ 0.95
NOTCH3Q9UM47 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
NOTCH3Q9UM47 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NOTCH3Q9UM47 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NOTCH3Q9UM47 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.99■□□□□ 0.95
NOTCH3Q9UM47 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.99■□□□□ 0.95
NOTCH3Q9UM47 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOTCH3Q9UM47 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOTCH3Q9UM47 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
NOTCH3Q9UM47 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.98■□□□□ 0.95
NOTCH3Q9UM47 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.97■□□□□ 0.95
NOTCH3Q9UM47 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.97■□□□□ 0.95
NOTCH3Q9UM47 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.96■□□□□ 0.95
NOTCH3Q9UM47 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.96■□□□□ 0.95
NOTCH3Q9UM47 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NOTCH3Q9UM47 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOTCH3Q9UM47 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.96■□□□□ 0.95
NOTCH3Q9UM47 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOTCH3Q9UM47 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NOTCH3Q9UM47 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOTCH3Q9UM47 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NOTCH3Q9UM47 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NOTCH3Q9UM47 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOTCH3Q9UM47 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.92■□□□□ 0.94
NOTCH3Q9UM47 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC20.92■□□□□ 0.94
NOTCH3Q9UM47 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NOTCH3Q9UM47 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.92■□□□□ 0.94
NOTCH3Q9UM47 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
NOTCH3Q9UM47 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
NOTCH3Q9UM47 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms