Protein–RNA interactions for Protein: Q9NV64

TMEM39A, Transmembrane protein 39A, humanhuman

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39AQ9NV64 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.32■■■□□ 2.6
TMEM39AQ9NV64 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
TMEM39AQ9NV64 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
TMEM39AQ9NV64 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.3■■■□□ 2.6
TMEM39AQ9NV64 AL133380.1-201ENST00000506013 324 ntBASIC31.29■■■□□ 2.6
TMEM39AQ9NV64 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TMEM39AQ9NV64 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
TMEM39AQ9NV64 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
TMEM39AQ9NV64 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
TMEM39AQ9NV64 MIR7108-201ENST00000614319 87 ntBASIC31.25■■■□□ 2.59
TMEM39AQ9NV64 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
TMEM39AQ9NV64 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
TMEM39AQ9NV64 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.24■■■□□ 2.59
TMEM39AQ9NV64 ABHD17AP4-201ENST00000411545 909 ntBASIC31.24■■■□□ 2.59
TMEM39AQ9NV64 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
TMEM39AQ9NV64 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TMEM39AQ9NV64 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.21■■■□□ 2.59
TMEM39AQ9NV64 MIR3665-201ENST00000578708 105 ntBASIC31.21■■■□□ 2.59
TMEM39AQ9NV64 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.18■■■□□ 2.58
TMEM39AQ9NV64 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.18■■■□□ 2.58
TMEM39AQ9NV64 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
TMEM39AQ9NV64 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.17■■■□□ 2.58
TMEM39AQ9NV64 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
TMEM39AQ9NV64 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
TMEM39AQ9NV64 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.11■■■□□ 2.57
TMEM39AQ9NV64 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
TMEM39AQ9NV64 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
TMEM39AQ9NV64 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.08■■■□□ 2.57
TMEM39AQ9NV64 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.07■■■□□ 2.56
TMEM39AQ9NV64 AC087741.3-201ENST00000624270 1347 ntBASIC31.06■■■□□ 2.56
TMEM39AQ9NV64 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
TMEM39AQ9NV64 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.05■■■□□ 2.56
TMEM39AQ9NV64 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.04■■■□□ 2.56
TMEM39AQ9NV64 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
TMEM39AQ9NV64 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
TMEM39AQ9NV64 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
TMEM39AQ9NV64 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.03■■■□□ 2.56
TMEM39AQ9NV64 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.02■■■□□ 2.56
TMEM39AQ9NV64 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
TMEM39AQ9NV64 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
TMEM39AQ9NV64 DUX4L28-201ENST00000623687 678 ntBASIC31.01■■■□□ 2.55
TMEM39AQ9NV64 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.96■■■□□ 2.55
TMEM39AQ9NV64 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.95■■■□□ 2.55
TMEM39AQ9NV64 HLA-V-202ENST00000446817 847 ntBASIC30.95■■■□□ 2.55
TMEM39AQ9NV64 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.95■■■□□ 2.55
TMEM39AQ9NV64 AC044849.2-201ENST00000606596 710 ntBASIC30.95■■■□□ 2.55
TMEM39AQ9NV64 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
TMEM39AQ9NV64 MIR762-201ENST00000390236 83 ntBASIC30.92■■■□□ 2.54
TMEM39AQ9NV64 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
TMEM39AQ9NV64 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.89■■■□□ 2.54
TMEM39AQ9NV64 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
TMEM39AQ9NV64 AC005559.1-201ENST00000589661 871 ntBASIC30.87■■■□□ 2.53
TMEM39AQ9NV64 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.86■■■□□ 2.53
TMEM39AQ9NV64 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
TMEM39AQ9NV64 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.84■■■□□ 2.53
TMEM39AQ9NV64 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.84■■■□□ 2.53
TMEM39AQ9NV64 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
TMEM39AQ9NV64 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.83■■■□□ 2.53
TMEM39AQ9NV64 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
TMEM39AQ9NV64 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.81■■■□□ 2.52
TMEM39AQ9NV64 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
TMEM39AQ9NV64 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
TMEM39AQ9NV64 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.77■■■□□ 2.52
TMEM39AQ9NV64 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.75■■■□□ 2.51
TMEM39AQ9NV64 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.73■■■□□ 2.51
TMEM39AQ9NV64 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.73■■■□□ 2.51
TMEM39AQ9NV64 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.73■■■□□ 2.51
TMEM39AQ9NV64 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.72■■■□□ 2.51
TMEM39AQ9NV64 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.72■■■□□ 2.51
TMEM39AQ9NV64 ZNRF2P2-203ENST00000454624 420 ntBASIC30.71■■■□□ 2.51
TMEM39AQ9NV64 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
TMEM39AQ9NV64 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
TMEM39AQ9NV64 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.69■■■□□ 2.5
TMEM39AQ9NV64 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.69■■■□□ 2.5
TMEM39AQ9NV64 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
TMEM39AQ9NV64 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
TMEM39AQ9NV64 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.65■■■□□ 2.5
TMEM39AQ9NV64 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.63■■■□□ 2.49
TMEM39AQ9NV64 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.63■■■□□ 2.49
TMEM39AQ9NV64 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
TMEM39AQ9NV64 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.63■■■□□ 2.49
TMEM39AQ9NV64 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
TMEM39AQ9NV64 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
TMEM39AQ9NV64 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
TMEM39AQ9NV64 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
TMEM39AQ9NV64 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
TMEM39AQ9NV64 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
TMEM39AQ9NV64 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.59■■■□□ 2.49
TMEM39AQ9NV64 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TMEM39AQ9NV64 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
TMEM39AQ9NV64 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
TMEM39AQ9NV64 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
TMEM39AQ9NV64 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
TMEM39AQ9NV64 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.52■■■□□ 2.48
TMEM39AQ9NV64 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.52■■■□□ 2.48
TMEM39AQ9NV64 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.52■■■□□ 2.48
TMEM39AQ9NV64 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
TMEM39AQ9NV64 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
TMEM39AQ9NV64 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
TMEM39AQ9NV64 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.48■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms