Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.75■■■□□ 2.67
VTA1Q9NP79 RPS2P35-201ENST00000443417 897 ntBASIC31.75■■■□□ 2.67
VTA1Q9NP79 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
VTA1Q9NP79 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
VTA1Q9NP79 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.73■■■□□ 2.67
VTA1Q9NP79 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
VTA1Q9NP79 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.73■■■□□ 2.67
VTA1Q9NP79 AL391121.1-201ENST00000607967 1349 ntBASIC31.73■■■□□ 2.67
VTA1Q9NP79 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
VTA1Q9NP79 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
VTA1Q9NP79 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.7■■■□□ 2.66
VTA1Q9NP79 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
VTA1Q9NP79 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
VTA1Q9NP79 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
VTA1Q9NP79 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.67■■■□□ 2.66
VTA1Q9NP79 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
VTA1Q9NP79 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.65■■■□□ 2.66
VTA1Q9NP79 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
VTA1Q9NP79 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
VTA1Q9NP79 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
VTA1Q9NP79 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
VTA1Q9NP79 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
VTA1Q9NP79 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
VTA1Q9NP79 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.58■■■□□ 2.65
VTA1Q9NP79 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
VTA1Q9NP79 AP006261.1-201ENST00000584783 668 ntBASIC31.55■■■□□ 2.64
VTA1Q9NP79 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
VTA1Q9NP79 AL162393.1-201ENST00000437852 946 ntBASIC31.52■■■□□ 2.64
VTA1Q9NP79 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
VTA1Q9NP79 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.5■■■□□ 2.63
VTA1Q9NP79 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.5■■■□□ 2.63
VTA1Q9NP79 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
VTA1Q9NP79 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.49■■■□□ 2.63
VTA1Q9NP79 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
VTA1Q9NP79 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.49■■■□□ 2.63
VTA1Q9NP79 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.48■■■□□ 2.63
VTA1Q9NP79 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.47■■■□□ 2.63
VTA1Q9NP79 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
VTA1Q9NP79 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
VTA1Q9NP79 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
VTA1Q9NP79 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
VTA1Q9NP79 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.41■■■□□ 2.62
VTA1Q9NP79 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
VTA1Q9NP79 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.4■■■□□ 2.62
VTA1Q9NP79 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
VTA1Q9NP79 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.4■■■□□ 2.62
VTA1Q9NP79 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
VTA1Q9NP79 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
VTA1Q9NP79 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
VTA1Q9NP79 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
VTA1Q9NP79 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
VTA1Q9NP79 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.36■■■□□ 2.61
VTA1Q9NP79 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
VTA1Q9NP79 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
VTA1Q9NP79 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
VTA1Q9NP79 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
VTA1Q9NP79 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.32■■■□□ 2.6
VTA1Q9NP79 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
VTA1Q9NP79 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.31■■■□□ 2.6
VTA1Q9NP79 MIR3665-201ENST00000578708 105 ntBASIC31.3■■■□□ 2.6
VTA1Q9NP79 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
VTA1Q9NP79 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.27■■■□□ 2.6
VTA1Q9NP79 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.25■■■□□ 2.59
VTA1Q9NP79 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
VTA1Q9NP79 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.22■■■□□ 2.59
VTA1Q9NP79 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
VTA1Q9NP79 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
VTA1Q9NP79 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.59
VTA1Q9NP79 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.19■■■□□ 2.58
VTA1Q9NP79 MIR762-201ENST00000390236 83 ntBASIC31.19■■■□□ 2.58
VTA1Q9NP79 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
VTA1Q9NP79 DUX4L28-201ENST00000623687 678 ntBASIC31.17■■■□□ 2.58
VTA1Q9NP79 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.16■■■□□ 2.58
VTA1Q9NP79 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
VTA1Q9NP79 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
VTA1Q9NP79 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
VTA1Q9NP79 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.14■■■□□ 2.58
VTA1Q9NP79 AC087741.3-201ENST00000624270 1347 ntBASIC31.14■■■□□ 2.58
VTA1Q9NP79 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
VTA1Q9NP79 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.11■■■□□ 2.57
VTA1Q9NP79 AC005559.1-201ENST00000589661 871 ntBASIC31.11■■■□□ 2.57
VTA1Q9NP79 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
VTA1Q9NP79 WASH5P-204ENST00000632292 975 ntBASIC31.09■■■□□ 2.57
VTA1Q9NP79 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
VTA1Q9NP79 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
VTA1Q9NP79 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.07■■■□□ 2.56
VTA1Q9NP79 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
VTA1Q9NP79 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VTA1Q9NP79 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.05■■■□□ 2.56
VTA1Q9NP79 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
VTA1Q9NP79 AC044849.2-201ENST00000606596 710 ntBASIC31.02■■■□□ 2.56
VTA1Q9NP79 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31■■■□□ 2.55
VTA1Q9NP79 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31■■■□□ 2.55
VTA1Q9NP79 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
VTA1Q9NP79 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.98■■■□□ 2.55
VTA1Q9NP79 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
VTA1Q9NP79 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
VTA1Q9NP79 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
VTA1Q9NP79 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
VTA1Q9NP79 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.95■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 974.5 ms