Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC34.46■■■■□ 3.11
SMC1BQ8NDV3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC34.46■■■■□ 3.11
SMC1BQ8NDV3 AC087741.3-201ENST00000624270 1347 ntBASIC34.46■■■■□ 3.11
SMC1BQ8NDV3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC34.45■■■■□ 3.11
SMC1BQ8NDV3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC34.45■■■■□ 3.11
SMC1BQ8NDV3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.44■■■■□ 3.1
SMC1BQ8NDV3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC34.42■■■■□ 3.1
SMC1BQ8NDV3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC34.38■■■■□ 3.09
SMC1BQ8NDV3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.38■■■■□ 3.09
SMC1BQ8NDV3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
SMC1BQ8NDV3 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.36■■■■□ 3.09
SMC1BQ8NDV3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC34.36■■■■□ 3.09
SMC1BQ8NDV3 AC044849.2-201ENST00000606596 710 ntBASIC34.35■■■■□ 3.09
SMC1BQ8NDV3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
SMC1BQ8NDV3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC34.34■■■■□ 3.09
SMC1BQ8NDV3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC34.34■■■■□ 3.09
SMC1BQ8NDV3 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.31■■■■□ 3.08
SMC1BQ8NDV3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.3■■■■□ 3.08
SMC1BQ8NDV3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC34.29■■■■□ 3.08
SMC1BQ8NDV3 DUX4L28-201ENST00000623687 678 ntBASIC34.28■■■■□ 3.08
SMC1BQ8NDV3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC34.27■■■■□ 3.08
SMC1BQ8NDV3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
SMC1BQ8NDV3 AL133380.1-201ENST00000506013 324 ntBASIC34.23■■■■□ 3.07
SMC1BQ8NDV3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
SMC1BQ8NDV3 ZNRF2P2-203ENST00000454624 420 ntBASIC34.22■■■■□ 3.07
SMC1BQ8NDV3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.2■■■■□ 3.07
SMC1BQ8NDV3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
SMC1BQ8NDV3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.18■■■■□ 3.06
SMC1BQ8NDV3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.18■■■■□ 3.06
SMC1BQ8NDV3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC34.17■■■■□ 3.06
SMC1BQ8NDV3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SMC1BQ8NDV3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SMC1BQ8NDV3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SMC1BQ8NDV3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
SMC1BQ8NDV3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.13■■■■□ 3.05
SMC1BQ8NDV3 MVK-208ENST00000539696 608 ntTSL 5 BASIC34.13■■■■□ 3.05
SMC1BQ8NDV3 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.1■■■■□ 3.05
SMC1BQ8NDV3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
SMC1BQ8NDV3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
SMC1BQ8NDV3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
SMC1BQ8NDV3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.05■■■■□ 3.04
SMC1BQ8NDV3 MIR4449-201ENST00000578365 66 ntBASIC34.04■■■■□ 3.04
SMC1BQ8NDV3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SMC1BQ8NDV3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.01■■■■□ 3.03
SMC1BQ8NDV3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC34.01■■■■□ 3.03
SMC1BQ8NDV3 AC005559.1-201ENST00000589661 871 ntBASIC34.01■■■■□ 3.03
SMC1BQ8NDV3 MIR762-201ENST00000390236 83 ntBASIC34■■■■□ 3.03
SMC1BQ8NDV3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.99■■■■□ 3.03
SMC1BQ8NDV3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SMC1BQ8NDV3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC33.98■■■■□ 3.03
SMC1BQ8NDV3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SMC1BQ8NDV3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SMC1BQ8NDV3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33.94■■■■□ 3.02
SMC1BQ8NDV3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SMC1BQ8NDV3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC33.91■■■■□ 3.02
SMC1BQ8NDV3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC33.89■■■■□ 3.02
SMC1BQ8NDV3 AC145285.7-201ENST00000614819 1539 ntBASIC33.89■■■■□ 3.02
SMC1BQ8NDV3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC33.86■■■■□ 3.01
SMC1BQ8NDV3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.84■■■■□ 3.01
SMC1BQ8NDV3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
SMC1BQ8NDV3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
SMC1BQ8NDV3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SMC1BQ8NDV3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.82■■■■□ 3
SMC1BQ8NDV3 MIR639-201ENST00000384974 98 ntBASIC33.82■■■■□ 3
SMC1BQ8NDV3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
SMC1BQ8NDV3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC33.8■■■■□ 3
SMC1BQ8NDV3 HSD17B1P1-201ENST00000590052 955 ntBASIC33.8■■■■□ 3
SMC1BQ8NDV3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC33.79■■■■□ 3
SMC1BQ8NDV3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC33.79■■■■□ 3
SMC1BQ8NDV3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC33.78■■■■□ 3
SMC1BQ8NDV3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC33.77■■■■□ 3
SMC1BQ8NDV3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC33.77■■■■□ 3
SMC1BQ8NDV3 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.76■■■■□ 3
SMC1BQ8NDV3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC33.74■■■□□ 2.99
SMC1BQ8NDV3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SMC1BQ8NDV3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC33.73■■■□□ 2.99
SMC1BQ8NDV3 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC33.72■■■□□ 2.99
SMC1BQ8NDV3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SMC1BQ8NDV3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC33.72■■■□□ 2.99
SMC1BQ8NDV3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SMC1BQ8NDV3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.71■■■□□ 2.99
SMC1BQ8NDV3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC33.7■■■□□ 2.99
SMC1BQ8NDV3 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.69■■■□□ 2.98
SMC1BQ8NDV3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SMC1BQ8NDV3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC33.69■■■□□ 2.98
SMC1BQ8NDV3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SMC1BQ8NDV3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC33.66■■■□□ 2.98
SMC1BQ8NDV3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
SMC1BQ8NDV3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC33.65■■■□□ 2.98
SMC1BQ8NDV3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC33.64■■■□□ 2.98
SMC1BQ8NDV3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SMC1BQ8NDV3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC33.61■■■□□ 2.97
SMC1BQ8NDV3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC33.58■■■□□ 2.97
SMC1BQ8NDV3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC33.58■■■□□ 2.97
SMC1BQ8NDV3 DUX4L29-201ENST00000425409 679 ntBASIC33.56■■■□□ 2.96
SMC1BQ8NDV3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC33.56■■■□□ 2.96
SMC1BQ8NDV3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC33.56■■■□□ 2.96
SMC1BQ8NDV3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC33.54■■■□□ 2.96
SMC1BQ8NDV3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
SMC1BQ8NDV3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC33.49■■■□□ 2.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms