Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HLA-V-202ENST00000446817 847 ntBASIC30.68■■■□□ 2.5
CHD9Q3L8U1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.66■■■□□ 2.5
CHD9Q3L8U1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.66■■■□□ 2.5
CHD9Q3L8U1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.65■■■□□ 2.5
CHD9Q3L8U1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.63■■■□□ 2.49
CHD9Q3L8U1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CHD9Q3L8U1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CHD9Q3L8U1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CHD9Q3L8U1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
CHD9Q3L8U1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.6■■■□□ 2.49
CHD9Q3L8U1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CHD9Q3L8U1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.57■■■□□ 2.48
CHD9Q3L8U1 AC087741.3-201ENST00000624270 1347 ntBASIC30.57■■■□□ 2.48
CHD9Q3L8U1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
CHD9Q3L8U1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CHD9Q3L8U1 MIR3665-201ENST00000578708 105 ntBASIC30.53■■■□□ 2.48
CHD9Q3L8U1 AL133380.1-201ENST00000506013 324 ntBASIC30.53■■■□□ 2.48
CHD9Q3L8U1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.51■■■□□ 2.47
CHD9Q3L8U1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CHD9Q3L8U1 DUX4L28-201ENST00000623687 678 ntBASIC30.49■■■□□ 2.47
CHD9Q3L8U1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.48■■■□□ 2.47
CHD9Q3L8U1 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.48■■■□□ 2.47
CHD9Q3L8U1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CHD9Q3L8U1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CHD9Q3L8U1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
CHD9Q3L8U1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.45■■■□□ 2.46
CHD9Q3L8U1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.44■■■□□ 2.46
CHD9Q3L8U1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.39■■■□□ 2.46
CHD9Q3L8U1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.37■■■□□ 2.45
CHD9Q3L8U1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.37■■■□□ 2.45
CHD9Q3L8U1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.37■■■□□ 2.45
CHD9Q3L8U1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.35■■■□□ 2.45
CHD9Q3L8U1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.34■■■□□ 2.45
CHD9Q3L8U1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.34■■■□□ 2.45
CHD9Q3L8U1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CHD9Q3L8U1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CHD9Q3L8U1 AC044849.2-201ENST00000606596 710 ntBASIC30.3■■■□□ 2.44
CHD9Q3L8U1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CHD9Q3L8U1 MIR762-201ENST00000390236 83 ntBASIC30.27■■■□□ 2.44
CHD9Q3L8U1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.24■■■□□ 2.43
CHD9Q3L8U1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CHD9Q3L8U1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CHD9Q3L8U1 AC005559.1-201ENST00000589661 871 ntBASIC30.23■■■□□ 2.43
CHD9Q3L8U1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.22■■■□□ 2.43
CHD9Q3L8U1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CHD9Q3L8U1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
CHD9Q3L8U1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CHD9Q3L8U1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.2■■■□□ 2.43
CHD9Q3L8U1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.2■■■□□ 2.43
CHD9Q3L8U1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.19■■■□□ 2.42
CHD9Q3L8U1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.19■■■□□ 2.42
CHD9Q3L8U1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
CHD9Q3L8U1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.19■■■□□ 2.42
CHD9Q3L8U1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.16■■■□□ 2.42
CHD9Q3L8U1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CHD9Q3L8U1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CHD9Q3L8U1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CHD9Q3L8U1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
CHD9Q3L8U1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.13■■■□□ 2.41
CHD9Q3L8U1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CHD9Q3L8U1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.12■■■□□ 2.41
CHD9Q3L8U1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.12■■■□□ 2.41
CHD9Q3L8U1 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.12■■■□□ 2.41
CHD9Q3L8U1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.09■■■□□ 2.41
CHD9Q3L8U1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.09■■■□□ 2.41
CHD9Q3L8U1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.07■■■□□ 2.4
CHD9Q3L8U1 MIR4449-201ENST00000578365 66 ntBASIC30.06■■■□□ 2.4
CHD9Q3L8U1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.05■■■□□ 2.4
CHD9Q3L8U1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD9Q3L8U1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD9Q3L8U1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CHD9Q3L8U1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.02■■■□□ 2.4
CHD9Q3L8U1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.98■■■□□ 2.39
CHD9Q3L8U1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.98■■■□□ 2.39
CHD9Q3L8U1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CHD9Q3L8U1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CHD9Q3L8U1 ZNRF2P2-203ENST00000454624 420 ntBASIC29.97■■■□□ 2.39
CHD9Q3L8U1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
CHD9Q3L8U1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.94■■■□□ 2.38
CHD9Q3L8U1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.94■■■□□ 2.38
CHD9Q3L8U1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CHD9Q3L8U1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CHD9Q3L8U1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC29.94■■■□□ 2.38
CHD9Q3L8U1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CHD9Q3L8U1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CHD9Q3L8U1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
CHD9Q3L8U1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CHD9Q3L8U1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.92■■■□□ 2.38
CHD9Q3L8U1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
CHD9Q3L8U1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.91■■■□□ 2.38
CHD9Q3L8U1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.91■■■□□ 2.38
CHD9Q3L8U1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.9■■■□□ 2.38
CHD9Q3L8U1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.89■■■□□ 2.38
CHD9Q3L8U1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CHD9Q3L8U1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CHD9Q3L8U1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CHD9Q3L8U1 MIR639-201ENST00000384974 98 ntBASIC29.82■■■□□ 2.36
CHD9Q3L8U1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CHD9Q3L8U1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CHD9Q3L8U1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms