Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.29■■□□□ 1.48
ABCA4P78363 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ABCA4P78363 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
ABCA4P78363 AP006261.1-201ENST00000584783 668 ntBASIC24.26■■□□□ 1.47
ABCA4P78363 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC24.26■■□□□ 1.47
ABCA4P78363 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ABCA4P78363 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
ABCA4P78363 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
ABCA4P78363 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
ABCA4P78363 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
ABCA4P78363 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.21■■□□□ 1.47
ABCA4P78363 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
ABCA4P78363 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
ABCA4P78363 AL133380.1-201ENST00000506013 324 ntBASIC24.18■■□□□ 1.46
ABCA4P78363 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.17■■□□□ 1.46
ABCA4P78363 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
ABCA4P78363 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ABCA4P78363 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.17■■□□□ 1.46
ABCA4P78363 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
ABCA4P78363 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
ABCA4P78363 ABHD17AP4-201ENST00000411545 909 ntBASIC24.14■■□□□ 1.46
ABCA4P78363 HLA-V-202ENST00000446817 847 ntBASIC24.13■■□□□ 1.45
ABCA4P78363 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
ABCA4P78363 MIR7108-201ENST00000614319 87 ntBASIC24.12■■□□□ 1.45
ABCA4P78363 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.11■■□□□ 1.45
ABCA4P78363 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
ABCA4P78363 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ABCA4P78363 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
ABCA4P78363 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.07■■□□□ 1.44
ABCA4P78363 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ABCA4P78363 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.07■■□□□ 1.44
ABCA4P78363 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
ABCA4P78363 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ABCA4P78363 MIR3665-201ENST00000578708 105 ntBASIC24.05■■□□□ 1.44
ABCA4P78363 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
ABCA4P78363 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
ABCA4P78363 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.01■■□□□ 1.43
ABCA4P78363 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
ABCA4P78363 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
ABCA4P78363 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC24■■□□□ 1.43
ABCA4P78363 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24■■□□□ 1.43
ABCA4P78363 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
ABCA4P78363 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24■■□□□ 1.43
ABCA4P78363 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24■■□□□ 1.43
ABCA4P78363 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
ABCA4P78363 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
ABCA4P78363 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
ABCA4P78363 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.98■■□□□ 1.43
ABCA4P78363 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.96■■□□□ 1.43
ABCA4P78363 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.95■■□□□ 1.43
ABCA4P78363 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
ABCA4P78363 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.94■■□□□ 1.42
ABCA4P78363 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ABCA4P78363 MIR762-201ENST00000390236 83 ntBASIC23.93■■□□□ 1.42
ABCA4P78363 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
ABCA4P78363 AC044849.2-201ENST00000606596 710 ntBASIC23.92■■□□□ 1.42
ABCA4P78363 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ABCA4P78363 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ABCA4P78363 AC087741.3-201ENST00000624270 1347 ntBASIC23.91■■□□□ 1.42
ABCA4P78363 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 DUX4L28-201ENST00000623687 678 ntBASIC23.9■■□□□ 1.42
ABCA4P78363 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
ABCA4P78363 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.87■■□□□ 1.41
ABCA4P78363 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.87■■□□□ 1.41
ABCA4P78363 AC005559.1-201ENST00000589661 871 ntBASIC23.87■■□□□ 1.41
ABCA4P78363 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ABCA4P78363 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.86■■□□□ 1.41
ABCA4P78363 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.86■■□□□ 1.41
ABCA4P78363 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.85■■□□□ 1.41
ABCA4P78363 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
ABCA4P78363 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.85■■□□□ 1.41
ABCA4P78363 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
ABCA4P78363 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ABCA4P78363 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ABCA4P78363 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
ABCA4P78363 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC23.79■■□□□ 1.4
ABCA4P78363 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.79■■□□□ 1.4
ABCA4P78363 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
ABCA4P78363 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ABCA4P78363 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.76■■□□□ 1.39
ABCA4P78363 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
ABCA4P78363 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
ABCA4P78363 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.75■■□□□ 1.39
ABCA4P78363 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.72■■□□□ 1.39
ABCA4P78363 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ABCA4P78363 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
ABCA4P78363 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
ABCA4P78363 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
ABCA4P78363 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
ABCA4P78363 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.7■■□□□ 1.38
ABCA4P78363 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.7■■□□□ 1.38
ABCA4P78363 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
ABCA4P78363 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.68■■□□□ 1.38
ABCA4P78363 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.68■■□□□ 1.38
ABCA4P78363 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms