Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.29■■□□□ 1.48
ABCA4P78363 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ABCA4P78363 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ABCA4P78363 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
ABCA4P78363 AP006261.1-201ENST00000584783 668 ntBASIC24.26■■□□□ 1.47
ABCA4P78363 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC24.26■■□□□ 1.47
ABCA4P78363 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ABCA4P78363 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
ABCA4P78363 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
ABCA4P78363 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
ABCA4P78363 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
ABCA4P78363 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.21■■□□□ 1.47
ABCA4P78363 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
ABCA4P78363 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
ABCA4P78363 AL133380.1-201ENST00000506013 324 ntBASIC24.18■■□□□ 1.46
ABCA4P78363 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.17■■□□□ 1.46
ABCA4P78363 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
ABCA4P78363 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ABCA4P78363 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.17■■□□□ 1.46
ABCA4P78363 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
ABCA4P78363 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
ABCA4P78363 ABHD17AP4-201ENST00000411545 909 ntBASIC24.14■■□□□ 1.46
ABCA4P78363 HLA-V-202ENST00000446817 847 ntBASIC24.13■■□□□ 1.45
ABCA4P78363 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
ABCA4P78363 MIR7108-201ENST00000614319 87 ntBASIC24.12■■□□□ 1.45
ABCA4P78363 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.11■■□□□ 1.45
ABCA4P78363 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
ABCA4P78363 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ABCA4P78363 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
ABCA4P78363 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.07■■□□□ 1.44
ABCA4P78363 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ABCA4P78363 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.07■■□□□ 1.44
ABCA4P78363 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
ABCA4P78363 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ABCA4P78363 MIR3665-201ENST00000578708 105 ntBASIC24.05■■□□□ 1.44
ABCA4P78363 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
ABCA4P78363 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
ABCA4P78363 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.01■■□□□ 1.43
ABCA4P78363 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
ABCA4P78363 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
ABCA4P78363 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC24■■□□□ 1.43
ABCA4P78363 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24■■□□□ 1.43
ABCA4P78363 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
ABCA4P78363 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24■■□□□ 1.43
ABCA4P78363 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24■■□□□ 1.43
ABCA4P78363 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
ABCA4P78363 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
ABCA4P78363 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
ABCA4P78363 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.98■■□□□ 1.43
ABCA4P78363 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.96■■□□□ 1.43
ABCA4P78363 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.95■■□□□ 1.43
ABCA4P78363 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
ABCA4P78363 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.94■■□□□ 1.42
ABCA4P78363 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ABCA4P78363 MIR762-201ENST00000390236 83 ntBASIC23.93■■□□□ 1.42
ABCA4P78363 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
ABCA4P78363 AC044849.2-201ENST00000606596 710 ntBASIC23.92■■□□□ 1.42
ABCA4P78363 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
ABCA4P78363 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ABCA4P78363 AC087741.3-201ENST00000624270 1347 ntBASIC23.91■■□□□ 1.42
ABCA4P78363 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 DUX4L28-201ENST00000623687 678 ntBASIC23.9■■□□□ 1.42
ABCA4P78363 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
ABCA4P78363 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
ABCA4P78363 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.87■■□□□ 1.41
ABCA4P78363 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.87■■□□□ 1.41
ABCA4P78363 AC005559.1-201ENST00000589661 871 ntBASIC23.87■■□□□ 1.41
ABCA4P78363 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ABCA4P78363 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.86■■□□□ 1.41
ABCA4P78363 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.86■■□□□ 1.41
ABCA4P78363 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.85■■□□□ 1.41
ABCA4P78363 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
ABCA4P78363 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.85■■□□□ 1.41
ABCA4P78363 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
ABCA4P78363 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ABCA4P78363 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ABCA4P78363 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
ABCA4P78363 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC23.79■■□□□ 1.4
ABCA4P78363 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.79■■□□□ 1.4
ABCA4P78363 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
ABCA4P78363 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ABCA4P78363 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.76■■□□□ 1.39
ABCA4P78363 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
ABCA4P78363 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
ABCA4P78363 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.75■■□□□ 1.39
ABCA4P78363 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.72■■□□□ 1.39
ABCA4P78363 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ABCA4P78363 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
ABCA4P78363 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
ABCA4P78363 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
ABCA4P78363 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
ABCA4P78363 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.7■■□□□ 1.38
ABCA4P78363 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.7■■□□□ 1.38
ABCA4P78363 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
ABCA4P78363 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.68■■□□□ 1.38
ABCA4P78363 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.68■■□□□ 1.38
ABCA4P78363 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms