Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
CSB-PGBD3P0DP91 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
CSB-PGBD3P0DP91 AL133380.1-201ENST00000506013 324 ntBASIC37.8■■■■□ 3.64
CSB-PGBD3P0DP91 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC37.75■■■■□ 3.63
CSB-PGBD3P0DP91 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
CSB-PGBD3P0DP91 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC37.71■■■■□ 3.63
CSB-PGBD3P0DP91 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
CSB-PGBD3P0DP91 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC37.7■■■■□ 3.63
CSB-PGBD3P0DP91 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC37.67■■■■□ 3.62
CSB-PGBD3P0DP91 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC37.67■■■■□ 3.62
CSB-PGBD3P0DP91 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC37.66■■■■□ 3.62
CSB-PGBD3P0DP91 HNRNPLP2-201ENST00000568980 1570 ntBASIC37.66■■■■□ 3.62
CSB-PGBD3P0DP91 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC37.66■■■■□ 3.62
CSB-PGBD3P0DP91 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC37.65■■■■□ 3.62
CSB-PGBD3P0DP91 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC37.63■■■■□ 3.61
CSB-PGBD3P0DP91 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
CSB-PGBD3P0DP91 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC37.61■■■■□ 3.61
CSB-PGBD3P0DP91 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC37.61■■■■□ 3.61
CSB-PGBD3P0DP91 EBPL-202ENST00000378268 680 ntTSL 3 BASIC37.6■■■■□ 3.61
CSB-PGBD3P0DP91 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
CSB-PGBD3P0DP91 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC37.59■■■■□ 3.61
CSB-PGBD3P0DP91 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC37.58■■■■□ 3.61
CSB-PGBD3P0DP91 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC37.54■■■■□ 3.6
CSB-PGBD3P0DP91 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC37.52■■■■□ 3.6
CSB-PGBD3P0DP91 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC37.5■■■■□ 3.59
CSB-PGBD3P0DP91 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC37.5■■■■□ 3.59
CSB-PGBD3P0DP91 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC37.49■■■■□ 3.59
CSB-PGBD3P0DP91 MIR3665-201ENST00000578708 105 ntBASIC37.49■■■■□ 3.59
CSB-PGBD3P0DP91 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC37.48■■■■□ 3.59
CSB-PGBD3P0DP91 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC37.47■■■■□ 3.59
CSB-PGBD3P0DP91 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC37.46■■■■□ 3.59
CSB-PGBD3P0DP91 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC37.44■■■■□ 3.58
CSB-PGBD3P0DP91 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC37.41■■■■□ 3.58
CSB-PGBD3P0DP91 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC37.39■■■■□ 3.58
CSB-PGBD3P0DP91 ABHD17AP4-201ENST00000411545 909 ntBASIC37.38■■■■□ 3.57
CSB-PGBD3P0DP91 MIR7108-201ENST00000614319 87 ntBASIC37.37■■■■□ 3.57
CSB-PGBD3P0DP91 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
CSB-PGBD3P0DP91 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC37.36■■■■□ 3.57
CSB-PGBD3P0DP91 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
CSB-PGBD3P0DP91 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC37.34■■■■□ 3.57
CSB-PGBD3P0DP91 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
CSB-PGBD3P0DP91 AC087741.3-201ENST00000624270 1347 ntBASIC37.34■■■■□ 3.57
CSB-PGBD3P0DP91 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC37.33■■■■□ 3.57
CSB-PGBD3P0DP91 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC37.32■■■■□ 3.57
CSB-PGBD3P0DP91 DUX4L28-201ENST00000623687 678 ntBASIC37.32■■■■□ 3.56
CSB-PGBD3P0DP91 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC37.31■■■■□ 3.56
CSB-PGBD3P0DP91 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
CSB-PGBD3P0DP91 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC37.29■■■■□ 3.56
CSB-PGBD3P0DP91 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
CSB-PGBD3P0DP91 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC37.28■■■■□ 3.56
CSB-PGBD3P0DP91 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
CSB-PGBD3P0DP91 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
CSB-PGBD3P0DP91 CHML-205ENST00000638160 705 ntTSL 3 BASIC37.27■■■■□ 3.56
CSB-PGBD3P0DP91 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
CSB-PGBD3P0DP91 MIR762-201ENST00000390236 83 ntBASIC37.26■■■■□ 3.56
CSB-PGBD3P0DP91 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.55
CSB-PGBD3P0DP91 PVT1-219ENST00000523427 938 ntTSL 3 BASIC37.23■■■■□ 3.55
CSB-PGBD3P0DP91 MLEC-202ENST00000412616 841 ntTSL 3 BASIC37.22■■■■□ 3.55
CSB-PGBD3P0DP91 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC37.22■■■■□ 3.55
CSB-PGBD3P0DP91 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
CSB-PGBD3P0DP91 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC37.21■■■■□ 3.55
CSB-PGBD3P0DP91 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC37.2■■■■□ 3.55
CSB-PGBD3P0DP91 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC37.19■■■■□ 3.54
CSB-PGBD3P0DP91 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC37.18■■■■□ 3.54
CSB-PGBD3P0DP91 AC005559.1-201ENST00000589661 871 ntBASIC37.18■■■■□ 3.54
CSB-PGBD3P0DP91 AC044849.2-201ENST00000606596 710 ntBASIC37.18■■■■□ 3.54
CSB-PGBD3P0DP91 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
CSB-PGBD3P0DP91 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC37.15■■■■□ 3.54
CSB-PGBD3P0DP91 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
CSB-PGBD3P0DP91 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
CSB-PGBD3P0DP91 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC37.13■■■■□ 3.53
CSB-PGBD3P0DP91 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
CSB-PGBD3P0DP91 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC37.11■■■■□ 3.53
CSB-PGBD3P0DP91 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC37.09■■■■□ 3.53
CSB-PGBD3P0DP91 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC37.09■■■■□ 3.53
CSB-PGBD3P0DP91 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC37.07■■■■□ 3.52
CSB-PGBD3P0DP91 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC37.05■■■■□ 3.52
CSB-PGBD3P0DP91 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC37.05■■■■□ 3.52
CSB-PGBD3P0DP91 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
CSB-PGBD3P0DP91 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
CSB-PGBD3P0DP91 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
CSB-PGBD3P0DP91 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
CSB-PGBD3P0DP91 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC37.01■■■■□ 3.52
CSB-PGBD3P0DP91 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC37.01■■■■□ 3.52
CSB-PGBD3P0DP91 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC37■■■■□ 3.51
CSB-PGBD3P0DP91 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC37■■■■□ 3.51
CSB-PGBD3P0DP91 MBP-237ENST00000579129 1052 ntTSL 5 BASIC36.99■■■■□ 3.51
CSB-PGBD3P0DP91 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
CSB-PGBD3P0DP91 HLA-V-202ENST00000446817 847 ntBASIC36.98■■■■□ 3.51
CSB-PGBD3P0DP91 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC36.97■■■■□ 3.51
CSB-PGBD3P0DP91 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC36.96■■■■□ 3.51
CSB-PGBD3P0DP91 DENR-202ENST00000455982 1052 ntTSL 5 BASIC36.93■■■■□ 3.5
CSB-PGBD3P0DP91 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC36.93■■■■□ 3.5
CSB-PGBD3P0DP91 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC36.9■■■■□ 3.5
CSB-PGBD3P0DP91 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC36.9■■■■□ 3.5
CSB-PGBD3P0DP91 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC36.9■■■■□ 3.5
CSB-PGBD3P0DP91 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
CSB-PGBD3P0DP91 BOD1-206ENST00000480951 814 ntTSL 2 BASIC36.89■■■■□ 3.5
CSB-PGBD3P0DP91 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC36.87■■■■□ 3.49
CSB-PGBD3P0DP91 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC36.85■■■■□ 3.49
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms