Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SNRPA1P09661 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
SNRPA1P09661 CAHM-201ENST00000604200 896 ntBASIC36.13■■■■□ 3.37
SNRPA1P09661 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC36.12■■■■□ 3.37
SNRPA1P09661 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC36.12■■■■□ 3.37
SNRPA1P09661 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC36.11■■■■□ 3.37
SNRPA1P09661 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC36.11■■■■□ 3.37
SNRPA1P09661 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC36.11■■■■□ 3.37
SNRPA1P09661 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC36.11■■■■□ 3.37
SNRPA1P09661 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC36.1■■■■□ 3.37
SNRPA1P09661 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC36.09■■■■□ 3.37
SNRPA1P09661 AL133380.1-201ENST00000506013 324 ntBASIC36.09■■■■□ 3.37
SNRPA1P09661 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC36.09■■■■□ 3.37
SNRPA1P09661 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.37
SNRPA1P09661 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.37
SNRPA1P09661 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
SNRPA1P09661 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
SNRPA1P09661 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
SNRPA1P09661 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC36.01■■■■□ 3.36
SNRPA1P09661 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SNRPA1P09661 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SNRPA1P09661 AL391121.1-201ENST00000607967 1349 ntBASIC35.98■■■■□ 3.35
SNRPA1P09661 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC35.96■■■■□ 3.35
SNRPA1P09661 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
SNRPA1P09661 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
SNRPA1P09661 RPS2P35-201ENST00000443417 897 ntBASIC35.89■■■■□ 3.34
SNRPA1P09661 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
SNRPA1P09661 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.88■■■■□ 3.33
SNRPA1P09661 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC35.88■■■■□ 3.33
SNRPA1P09661 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.86■■■■□ 3.33
SNRPA1P09661 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.86■■■■□ 3.33
SNRPA1P09661 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SNRPA1P09661 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
SNRPA1P09661 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC35.84■■■■□ 3.33
SNRPA1P09661 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.8■■■■□ 3.32
SNRPA1P09661 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.8■■■■□ 3.32
SNRPA1P09661 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
SNRPA1P09661 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.75■■■■□ 3.31
SNRPA1P09661 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
SNRPA1P09661 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
SNRPA1P09661 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.72■■■■□ 3.31
SNRPA1P09661 AL162393.1-201ENST00000437852 946 ntBASIC35.67■■■■□ 3.3
SNRPA1P09661 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.67■■■■□ 3.3
SNRPA1P09661 AP006261.1-201ENST00000584783 668 ntBASIC35.67■■■■□ 3.3
SNRPA1P09661 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.67■■■■□ 3.3
SNRPA1P09661 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.63■■■■□ 3.29
SNRPA1P09661 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC35.62■■■■□ 3.29
SNRPA1P09661 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
SNRPA1P09661 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SNRPA1P09661 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.6■■■■□ 3.29
SNRPA1P09661 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.6■■■■□ 3.29
SNRPA1P09661 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SNRPA1P09661 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
SNRPA1P09661 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
SNRPA1P09661 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
SNRPA1P09661 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.57■■■■□ 3.28
SNRPA1P09661 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.54■■■■□ 3.28
SNRPA1P09661 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.54■■■■□ 3.28
SNRPA1P09661 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
SNRPA1P09661 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SNRPA1P09661 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
SNRPA1P09661 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
SNRPA1P09661 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
SNRPA1P09661 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC35.5■■■■□ 3.27
SNRPA1P09661 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC35.5■■■■□ 3.27
SNRPA1P09661 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SNRPA1P09661 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
SNRPA1P09661 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
SNRPA1P09661 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SNRPA1P09661 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.45■■■■□ 3.27
SNRPA1P09661 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.45■■■■□ 3.27
SNRPA1P09661 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.44■■■■□ 3.26
SNRPA1P09661 MIR3665-201ENST00000578708 105 ntBASIC35.42■■■■□ 3.26
SNRPA1P09661 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.41■■■■□ 3.26
SNRPA1P09661 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
SNRPA1P09661 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC35.4■■■■□ 3.26
SNRPA1P09661 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC35.39■■■■□ 3.26
SNRPA1P09661 MIR762-201ENST00000390236 83 ntBASIC35.39■■■■□ 3.26
SNRPA1P09661 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC35.39■■■■□ 3.26
SNRPA1P09661 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC35.37■■■■□ 3.25
SNRPA1P09661 WASH5P-204ENST00000632292 975 ntBASIC35.37■■■■□ 3.25
SNRPA1P09661 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
SNRPA1P09661 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
SNRPA1P09661 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.35■■■■□ 3.25
SNRPA1P09661 DUX4L28-201ENST00000623687 678 ntBASIC35.34■■■■□ 3.25
SNRPA1P09661 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SNRPA1P09661 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC35.32■■■■□ 3.24
SNRPA1P09661 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.31■■■■□ 3.24
SNRPA1P09661 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SNRPA1P09661 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC35.3■■■■□ 3.24
SNRPA1P09661 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SNRPA1P09661 AC087741.3-201ENST00000624270 1347 ntBASIC35.28■■■■□ 3.24
SNRPA1P09661 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
SNRPA1P09661 AC005559.1-201ENST00000589661 871 ntBASIC35.26■■■■□ 3.24
SNRPA1P09661 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.26■■■■□ 3.24
SNRPA1P09661 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.24■■■■□ 3.23
SNRPA1P09661 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNRPA1P09661 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNRPA1P09661 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
SNRPA1P09661 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.19■■■■□ 3.22
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms