Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RB1P06400 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.26■■■□□ 2.43
RB1P06400 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.26■■■□□ 2.43
RB1P06400 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
RB1P06400 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.25■■■□□ 2.43
RB1P06400 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RB1P06400 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
RB1P06400 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.24■■■□□ 2.43
RB1P06400 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
RB1P06400 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
RB1P06400 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RB1P06400 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RB1P06400 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.16■■■□□ 2.42
RB1P06400 MIR3665-201ENST00000578708 105 ntBASIC30.16■■■□□ 2.42
RB1P06400 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.14■■■□□ 2.42
RB1P06400 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.13■■■□□ 2.41
RB1P06400 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RB1P06400 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RB1P06400 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.11■■■□□ 2.41
RB1P06400 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
RB1P06400 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.1■■■□□ 2.41
RB1P06400 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RB1P06400 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RB1P06400 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.09■■■□□ 2.41
RB1P06400 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RB1P06400 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.09■■■□□ 2.41
RB1P06400 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
RB1P06400 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.08■■■□□ 2.41
RB1P06400 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.08■■■□□ 2.41
RB1P06400 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RB1P06400 ABHD17AP4-201ENST00000411545 909 ntBASIC30.05■■■□□ 2.4
RB1P06400 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.05■■■□□ 2.4
RB1P06400 MIR7108-201ENST00000614319 87 ntBASIC30■■■□□ 2.39
RB1P06400 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
RB1P06400 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.98■■■□□ 2.39
RB1P06400 AC087741.3-201ENST00000624270 1347 ntBASIC29.97■■■□□ 2.39
RB1P06400 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
RB1P06400 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RB1P06400 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.95■■■□□ 2.39
RB1P06400 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
RB1P06400 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC29.92■■■□□ 2.38
RB1P06400 DUX4L28-201ENST00000623687 678 ntBASIC29.92■■■□□ 2.38
RB1P06400 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
RB1P06400 AC044849.2-201ENST00000606596 710 ntBASIC29.88■■■□□ 2.37
RB1P06400 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
RB1P06400 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.87■■■□□ 2.37
RB1P06400 MIR762-201ENST00000390236 83 ntBASIC29.87■■■□□ 2.37
RB1P06400 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.87■■■□□ 2.37
RB1P06400 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
RB1P06400 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.86■■■□□ 2.37
RB1P06400 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.83■■■□□ 2.37
RB1P06400 AC005559.1-201ENST00000589661 871 ntBASIC29.82■■■□□ 2.36
RB1P06400 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.82■■■□□ 2.36
RB1P06400 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
RB1P06400 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.81■■■□□ 2.36
RB1P06400 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
RB1P06400 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RB1P06400 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RB1P06400 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.77■■■□□ 2.36
RB1P06400 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
RB1P06400 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
RB1P06400 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
RB1P06400 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.74■■■□□ 2.35
RB1P06400 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
RB1P06400 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
RB1P06400 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.73■■■□□ 2.35
RB1P06400 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC29.71■■■□□ 2.35
RB1P06400 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.71■■■□□ 2.35
RB1P06400 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.71■■■□□ 2.35
RB1P06400 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.71■■■□□ 2.35
RB1P06400 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
RB1P06400 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.7■■■□□ 2.35
RB1P06400 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
RB1P06400 HLA-V-202ENST00000446817 847 ntBASIC29.69■■■□□ 2.34
RB1P06400 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.69■■■□□ 2.34
RB1P06400 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
RB1P06400 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
RB1P06400 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.67■■■□□ 2.34
RB1P06400 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
RB1P06400 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.66■■■□□ 2.34
RB1P06400 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RB1P06400 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RB1P06400 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
RB1P06400 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
RB1P06400 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.63■■■□□ 2.33
RB1P06400 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
RB1P06400 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.62■■■□□ 2.33
RB1P06400 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
RB1P06400 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
RB1P06400 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
RB1P06400 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
RB1P06400 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
RB1P06400 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
RB1P06400 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.59■■■□□ 2.33
RB1P06400 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RB1P06400 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.58■■■□□ 2.33
RB1P06400 ZNRF2P2-203ENST00000454624 420 ntBASIC29.57■■■□□ 2.32
RB1P06400 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
RB1P06400 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.54■■■□□ 2.32
RB1P06400 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms