Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MAPKAPK5-201ENST00000546394 567 ntTSL 319.82■□□□□ 0.763e-15■■■■■ 344.6
SF3B1O75533 FIBP-211ENST00000533037 1010 ntTSL 519.78■□□□□ 0.763e-15■■■■■ 344.6
SF3B1O75533 WNT5B-207ENST00000543071 1304 ntTSL 1 (best)19.6■□□□□ 0.733e-15■■■■■ 344.6
SF3B1O75533 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.723e-15■■■■■ 344.6
SF3B1O75533 GSN-207ENST00000432226 1042 ntTSL 519.1■□□□□ 0.653e-15■■■■■ 344.6
SF3B1O75533 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.01■□□□□ 0.633e-15■■■■■ 344.6
SF3B1O75533 FNBP4-215ENST00000542975 577 ntTSL 418.85■□□□□ 0.613e-15■■■■■ 344.6
SF3B1O75533 SFSWAP-205ENST00000537164 961 ntTSL 518.81■□□□□ 0.63e-15■■■■■ 344.6
SF3B1O75533 FBF1-207ENST00000588283 877 ntTSL 318.59■□□□□ 0.573e-15■■■■■ 344.6
SF3B1O75533 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.433e-15■■■■■ 344.6
SF3B1O75533 PCNX3-205ENST00000531280 472 ntTSL 517.64■□□□□ 0.413e-15■■■■■ 344.6
SF3B1O75533 CERCAM-207ENST00000463535 1205 ntTSL 1 (best)17.64■□□□□ 0.413e-15■■■■■ 344.6
SF3B1O75533 SLC39A4-206ENST00000530807 498 ntTSL 217.54■□□□□ 0.43e-15■■■■■ 344.6
SF3B1O75533 SLC25A6-202ENST00000475167 900 ntTSL 217.47■□□□□ 0.393e-15■■■■■ 344.6
SF3B1O75533 GSN-212ENST00000477863 716 ntTSL 417.38■□□□□ 0.373e-15■■■■■ 344.6
SF3B1O75533 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.26■□□□□ 0.353e-15■■■■■ 344.6
SF3B1O75533 NOP14-205ENST00000507120 703 ntTSL 316.85■□□□□ 0.293e-15■■■■■ 344.6
SF3B1O75533 GSN-210ENST00000477104 806 ntTSL 416.83■□□□□ 0.283e-15■■■■■ 344.6
SF3B1O75533 SLC39A4-209ENST00000532718 668 ntTSL 1 (best)16.83■□□□□ 0.283e-15■■■■■ 344.6
SF3B1O75533 FIBP-209ENST00000532679 1046 ntTSL 1 (best)16.53■□□□□ 0.243e-15■■■■■ 344.6
SF3B1O75533 FIBP-203ENST00000426652 587 ntTSL 316.53■□□□□ 0.243e-15■■■■■ 344.6
SF3B1O75533 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.21■□□□□ 0.193e-15■■■■■ 344.6
SF3B1O75533 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.173e-15■■■■■ 344.6
SF3B1O75533 FIBP-208ENST00000532229 757 ntTSL 316.11■□□□□ 0.173e-15■■■■■ 344.6
SF3B1O75533 FNBP4-214ENST00000540172 582 ntTSL 315.93■□□□□ 0.143e-15■■■■■ 344.6
SF3B1O75533 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.86■□□□□ 0.133e-15■■■■■ 344.6
SF3B1O75533 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.78■□□□□ 0.123e-15■■■■■ 344.6
SF3B1O75533 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.2■□□□□ 0.023e-15■■■■■ 344.6
SF3B1O75533 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.8□□□□□ -0.043e-15■■■■■ 344.6
SF3B1O75533 SLC25A6-203ENST00000484026 854 ntTSL 514.41□□□□□ -0.13e-15■■■■■ 344.6
SF3B1O75533 PCNX3-202ENST00000439247 3104 ntTSL 1 (best)14□□□□□ -0.173e-15■■■■■ 344.6
SF3B1O75533 CERCAM-208ENST00000472858 338 ntTSL 513.79□□□□□ -0.23e-15■■■■■ 344.6
SF3B1O75533 SCAPER-219ENST00000568382 544 ntTSL 413.38□□□□□ -0.273e-15■■■■■ 344.6
SF3B1O75533 RAB30-AS1-203ENST00000527627 504 ntTSL 313.21□□□□□ -0.293e-15■■■■■ 344.6
SF3B1O75533 FBF1-202ENST00000585990 4481 ntTSL 213.12□□□□□ -0.313e-15■■■■■ 344.6
SF3B1O75533 FBF1-210ENST00000592193 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.353e-15■■■■■ 344.6
SF3B1O75533 GSN-205ENST00000373823 3341 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.373e-15■■■■■ 344.6
SF3B1O75533 FBF1-201ENST00000319129 4156 ntAPPRIS ALT2 TSL 512.34□□□□□ -0.433e-15■■■■■ 344.6
SF3B1O75533 GSN-213ENST00000483960 802 ntTSL 312.25□□□□□ -0.453e-15■■■■■ 344.6
SF3B1O75533 CERCAM-211ENST00000487001 553 ntTSL 512.24□□□□□ -0.453e-15■■■■■ 344.6
SF3B1O75533 MRPS18C-204ENST00000507019 666 ntTSL 2 BASIC12.01□□□□□ -0.493e-15■■■■■ 344.6
SF3B1O75533 FBF1-212ENST00000636174 3626 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.493e-15■■■■■ 344.6
SF3B1O75533 SMURF1-204ENST00000480055 1012 ntTSL 311.43□□□□□ -0.583e-15■■■■■ 344.6
SF3B1O75533 MRPS18C-208ENST00000512375 2482 ntTSL 211.36□□□□□ -0.593e-15■■■■■ 344.6
SF3B1O75533 ABHD2-202ENST00000562073 588 ntTSL 510.38□□□□□ -0.753e-15■■■■■ 344.6
SF3B1O75533 MRPS18C-205ENST00000507349 350 ntTSL 3 BASIC9.9□□□□□ -0.823e-15■■■■■ 344.6
SF3B1O75533 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.173e-15■■■■■ 344.6
SF3B1O75533 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.64□□□□□ -1.517e-14■■■■■ 344.6
SF3B1O75533 MRPS18C-207ENST00000509970 855 ntTSL 32.92□□□□□ -1.943e-15■■■■■ 344.6
SF3B1O75533 LARP7-212ENST00000511529 1003 ntTSL 52.69□□□□□ -1.983e-15■■■■■ 344.6
SF3B1O75533 MRPS18C-203ENST00000505719 490 ntTSL 32.39□□□□□ -2.033e-15■■■■■ 344.6
SF3B1O75533 PIGQ-208ENST00000443147 2054 ntTSL 222.1■■□□□ 1.134e-19■■■■■ 336
SF3B1O75533 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.94e-19■■■■■ 336
SF3B1O75533 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.59■□□□□ 0.894e-19■■■■■ 336
SF3B1O75533 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.11■□□□□ 0.814e-19■■■■■ 336
SF3B1O75533 PIGQ-218ENST00000635909 2212 ntTSL 519.23■□□□□ 0.674e-19■■■■■ 336
SF3B1O75533 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.524e-19■■■■■ 336
SF3B1O75533 PIGQ-224ENST00000638143 563 ntTSL 517.24■□□□□ 0.354e-19■■■■■ 336
SF3B1O75533 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.04■□□□□ 0.324e-19■■■■■ 336
SF3B1O75533 PIGQ-222ENST00000637468 650 ntTSL 516.74■□□□□ 0.274e-19■■■■■ 336
SF3B1O75533 PIGQ-221ENST00000636657 2841 ntTSL 516.35■□□□□ 0.214e-19■■■■■ 336
SF3B1O75533 PIGQ-220ENST00000636005 1355 ntTSL 516.08■□□□□ 0.164e-19■■■■■ 336
SF3B1O75533 SMC1A-206ENST00000470241 838 ntTSL 311.36□□□□□ -0.594e-12■■■■■ 336
SF3B1O75533 MCPH1-206ENST00000522020 470 ntTSL 32□□□□□ -2.094e-19■■■■■ 336
SF3B1O75533 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.58■□□□□ 0.738e-8■■■■■ 325.1
SF3B1O75533 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.43■□□□□ 0.78e-8■■■■■ 325.1
SF3B1O75533 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.7■□□□□ 0.428e-8■■■■■ 325.1
SF3B1O75533 C1orf43-207ENST00000470180 1861 ntTSL 517.61■□□□□ 0.418e-8■■■■■ 325.1
SF3B1O75533 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.28■□□□□ 0.368e-8■■■■■ 325.1
SF3B1O75533 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.69■□□□□ 0.268e-8■■■■■ 325.1
SF3B1O75533 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.33■□□□□ 0.28e-8■■■■■ 325.1
SF3B1O75533 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.078e-8■■■■■ 325.1
SF3B1O75533 SMC4-221ENST00000489573 1553 ntTSL 1 (best)22.86■■□□□ 1.257e-33■■■■■ 320.9
SF3B1O75533 SMC4-209ENST00000468653 1756 ntTSL 219.87■□□□□ 0.777e-33■■■■■ 320.9
SF3B1O75533 SMC4-213ENST00000472282 667 ntTSL 39.91□□□□□ -0.827e-33■■■■■ 320.9
SF3B1O75533 SMC4-214ENST00000472991 582 ntTSL 59.82□□□□□ -0.847e-33■■■■■ 320.9
SF3B1O75533 SMC4-212ENST00000470240 724 ntTSL 38.26□□□□□ -1.097e-33■■■■■ 320.9
SF3B1O75533 SMC4-208ENST00000467468 566 ntTSL 43.55□□□□□ -1.847e-33■■■■■ 320.9
SF3B1O75533 SMC4-227ENST00000497984 563 ntTSL 51.84□□□□□ -2.127e-33■■■■■ 320.9
SF3B1O75533 SMC4-219ENST00000487747 637 ntTSL 51.27□□□□□ -2.217e-33■■■■■ 320.9
SF3B1O75533 MIR15B-201ENST00000385045 98 ntBASIC0.74□□□□□ -2.297e-33■■■■■ 320.9
SF3B1O75533 ATG4A-206ENST00000457035 939 ntTSL 310.86□□□□□ -0.673e-8■■■■■ 315.9
SF3B1O75533 ATG4A-202ENST00000345734 2129 ntTSL 1 (best) BASIC9.48□□□□□ -0.893e-8■■■■■ 315.9
SF3B1O75533 ATG4A-203ENST00000372232 2315 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.973e-8■■■■■ 315.9
SF3B1O75533 ATG4A-201ENST00000343524 1941 ntTSL 28.48□□□□□ -1.053e-8■■■■■ 315.9
SF3B1O75533 ATG4A-204ENST00000372246 2501 ntTSL 1 (best)5.59□□□□□ -1.513e-8■■■■■ 315.9
SF3B1O75533 TSGA10-217ENST00000494483 559 ntTSL 223.99■■□□□ 1.431e-13■■■■■ 310.2
SF3B1O75533 WSCD2-211ENST00000551638 569 ntTSL 423.7■■□□□ 1.381e-13■■■■■ 310.2
SF3B1O75533 PBX4-204ENST00000558276 727 ntTSL 223.11■■□□□ 1.291e-13■■■■■ 310.2
SF3B1O75533 WSCD2-208ENST00000550529 766 ntTSL 422.61■■□□□ 1.211e-13■■■■■ 310.2
SF3B1O75533 MAX-215ENST00000556892 474 ntTSL 522.35■■□□□ 1.171e-13■■■■■ 310.2
SF3B1O75533 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.111e-13■■■■■ 310.2
SF3B1O75533 TSGA10-206ENST00000462782 561 ntTSL 221.98■■□□□ 1.111e-13■■■■■ 310.2
SF3B1O75533 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.52■■□□□ 1.031e-13■■■■■ 310.2
SF3B1O75533 TSGA10-216ENST00000489926 588 ntTSL 421.19■□□□□ 0.981e-13■■■■■ 310.2
SF3B1O75533 SPAG6-205ENST00000456231 700 ntTSL 321.14■□□□□ 0.971e-13■■■■■ 310.2
SF3B1O75533 TSGA10-218ENST00000497915 580 ntTSL 420.72■□□□□ 0.911e-13■■■■■ 310.2
SF3B1O75533 IFT140-208ENST00000566818 722 ntTSL 320.63■□□□□ 0.896e-11■■■■■ 310.2
SF3B1O75533 EP400NL-201ENST00000332441 2741 ntTSL 220.03■□□□□ 0.81e-13■■■■■ 310.2
SF3B1O75533 ACAP3-210ENST00000478065 2393 ntTSL 320.02■□□□□ 0.81e-13■■■■■ 310.2
Retrieved 100 of 46,956 protein–RNA pairs in 3944.5 ms