RNA–Protein interactions for RNA: ENST00000439247.2

PCNX3-202, Transcript of pecanex 3, humanhuman

TSL 1 (best)

Gene PCNX3, Length 3,104 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX3-202ENST00000439247 NISCHQ9Y2I1 1504 aa27.96■■■□□ 2.07
PCNX3-202ENST00000439247 CCDC180Q9P1Z9 1646 aa24.3■■□□□ 1.48
PCNX3-202ENST00000439247 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.35
PCNX3-202ENST00000439247 DCAF8L2P0C7V8 631 aa23.36■■□□□ 1.33
PCNX3-202ENST00000439247 ABCC9O60706 1549 aa23.36■■□□□ 1.33
PCNX3-202ENST00000439247 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
PCNX3-202ENST00000439247 SUPT5HO00267 1087 aaKnown RBP23.12■■□□□ 1.29
PCNX3-202ENST00000439247 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
PCNX3-202ENST00000439247 HRCP23327 699 aa22.82■■□□□ 1.24
PCNX3-202ENST00000439247 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
PCNX3-202ENST00000439247 NACADO15069 1562 aa22.7■■□□□ 1.22
PCNX3-202ENST00000439247 PCGF6Q9BYE7 350 aa22.62■■□□□ 1.21
PCNX3-202ENST00000439247 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
PCNX3-202ENST00000439247 RB1CC1Q8TDY2 1594 aa22.56■■□□□ 1.2
PCNX3-202ENST00000439247 SCRIBQ14160 1630 aa22.55■■□□□ 1.2
PCNX3-202ENST00000439247 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
PCNX3-202ENST00000439247 UNC13AQ9UPW8 1703 aa22.19■■□□□ 1.14
PCNX3-202ENST00000439247 LOC105371045A0A1W2PR82 267 aa22.15■■□□□ 1.14
PCNX3-202ENST00000439247 PABPN1Q86U42 306 aaKnown RBP eCLIP22.09■■□□□ 1.13
PCNX3-202ENST00000439247 BICRAQ9NZM4 1560 aa21.99■■□□□ 1.11
PCNX3-202ENST00000439247 CECR2Q9BXF3 1484 aa21.87■■□□□ 1.09
PCNX3-202ENST00000439247 TRIM26Q12899 539 aaPredicted RBP21.79■■□□□ 1.08
PCNX3-202ENST00000439247 RSF1Q96T23 1441 aaPredicted RBP21.7■■□□□ 1.06
PCNX3-202ENST00000439247 MROH2BQ7Z745 1585 aa21.68■■□□□ 1.06
PCNX3-202ENST00000439247 BAZ1AQ9NRL2 1556 aaPredicted RBP21.55■■□□□ 1.04
PCNX3-202ENST00000439247 SCAF1Q9H7N4 1312 aaKnown RBP21.55■■□□□ 1.04
PCNX3-202ENST00000439247 SMARCA4P51532 1647 aa21.52■■□□□ 1.03
PCNX3-202ENST00000439247 WIZO95785 1651 aa21.5■■□□□ 1.03
PCNX3-202ENST00000439247 EHMT2Q96KQ7 1210 aa21.48■■□□□ 1.03
PCNX3-202ENST00000439247 FAM9AQ8IZU1 332 aaPredicted RBP21.44■■□□□ 1.02
PCNX3-202ENST00000439247 ZEB1P37275 1124 aaPredicted RBP21.39■■□□□ 1.01
PCNX3-202ENST00000439247 PELP1Q8IZL8 1130 aaKnown RBP21.38■■□□□ 1.01
PCNX3-202ENST00000439247 EIF4G1Q04637 1599 aaKnown RBP21.31■■□□□ 1
PCNX3-202ENST00000439247 TRIM41Q8WV44 630 aa21.29■■□□□ 1
PCNX3-202ENST00000439247 ATAD2BQ9ULI0 1458 aa21.22■□□□□ 0.99
PCNX3-202ENST00000439247 PEG3Q9GZU2 1588 aa21.18■□□□□ 0.98
PCNX3-202ENST00000439247 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
PCNX3-202ENST00000439247 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
PCNX3-202ENST00000439247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.08■□□□□ 0.97
PCNX3-202ENST00000439247 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
PCNX3-202ENST00000439247 NEUROD1Q13562 356 aa21.06■□□□□ 0.96
PCNX3-202ENST00000439247 CC2D2AQ9P2K1 1620 aa21.05■□□□□ 0.96
PCNX3-202ENST00000439247 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
PCNX3-202ENST00000439247 NCAPD3P42695 1498 aa21■□□□□ 0.95
PCNX3-202ENST00000439247 ACIN1Q9UKV3 1341 aaKnown RBP21■□□□□ 0.95
PCNX3-202ENST00000439247 CCER1Q8TC90 406 aaPredicted RBP20.93■□□□□ 0.94
PCNX3-202ENST00000439247 HMGXB3Q12766 1538 aa20.92■□□□□ 0.94
PCNX3-202ENST00000439247 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
PCNX3-202ENST00000439247 TTBK1Q5TCY1 1321 aaPredicted RBP20.88■□□□□ 0.93
PCNX3-202ENST00000439247 DNAJC5BQ9UF47 199 aa20.83■□□□□ 0.93
PCNX3-202ENST00000439247 DIEXFQ68CQ4 756 aaKnown RBP20.82■□□□□ 0.92
PCNX3-202ENST00000439247 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
PCNX3-202ENST00000439247 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
PCNX3-202ENST00000439247 YTHDC1Q96MU7 727 aaKnown RBP20.61■□□□□ 0.89
PCNX3-202ENST00000439247 CFTRP13569 1480 aa20.53■□□□□ 0.88
PCNX3-202ENST00000439247 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
PCNX3-202ENST00000439247 NESP48681 1621 aa20.5■□□□□ 0.87
PCNX3-202ENST00000439247 ZNF316A6NFI3 1004 aaPredicted RBP20.43■□□□□ 0.86
PCNX3-202ENST00000439247 WRNQ14191 1432 aaPredicted RBP eCLIP20.4■□□□□ 0.86
PCNX3-202ENST00000439247 MIER1Q8N108 512 aa20.38■□□□□ 0.85
PCNX3-202ENST00000439247 SYNJ1O43426 1573 aa20.37■□□□□ 0.85
PCNX3-202ENST00000439247 CEP162Q5TB80 1403 aa20.36■□□□□ 0.85
PCNX3-202ENST00000439247 MYT1Q01538 1121 aa20.36■□□□□ 0.85
PCNX3-202ENST00000439247 PRDM2Q13029 1718 aa20.31■□□□□ 0.84
PCNX3-202ENST00000439247 FANCD2Q9BXW9 1451 aa20.29■□□□□ 0.84
PCNX3-202ENST00000439247 SOGA1O94964 1423 aa20.29■□□□□ 0.84
PCNX3-202ENST00000439247 LAMC3Q9Y6N6 1575 aa20.27■□□□□ 0.84
PCNX3-202ENST00000439247 HNRNPUL2Q1KMD3 747 aaKnown RBP20.27■□□□□ 0.84
PCNX3-202ENST00000439247 UBTFP17480 764 aaKnown RBP20.26■□□□□ 0.83
PCNX3-202ENST00000439247 CUX1P39880 1505 aa20.26■□□□□ 0.83
PCNX3-202ENST00000439247 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
PCNX3-202ENST00000439247 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
PCNX3-202ENST00000439247 TNIKQ9UKE5 1360 aa20.16■□□□□ 0.82
PCNX3-202ENST00000439247 BIVM-ERCC5R4GMW8 1640 aa20.16■□□□□ 0.82
PCNX3-202ENST00000439247 KIF21AQ7Z4S6 1674 aa20.15■□□□□ 0.82
PCNX3-202ENST00000439247 PDS5BQ9NTI5 1447 aa20.15■□□□□ 0.82
PCNX3-202ENST00000439247 CEP164Q9UPV0 1460 aa20.15■□□□□ 0.82
PCNX3-202ENST00000439247 CSRNP3Q8WYN3 585 aa20.13■□□□□ 0.81
PCNX3-202ENST00000439247 URB2Q14146 1524 aaKnown RBP20.08■□□□□ 0.81
PCNX3-202ENST00000439247 TOPBP1Q92547 1522 aa20.05■□□□□ 0.8
PCNX3-202ENST00000439247 FGD5Q6ZNL6 1462 aa20.05■□□□□ 0.8
PCNX3-202ENST00000439247 DNMBPQ6XZF7 1577 aa20.03■□□□□ 0.8
PCNX3-202ENST00000439247 RANGAP1P46060 587 aaPredicted RBP20.02■□□□□ 0.8
PCNX3-202ENST00000439247 RAD54L2Q9Y4B4 1467 aa19.98■□□□□ 0.79
PCNX3-202ENST00000439247 POLA1P09884 1462 aaPredicted RBP19.97■□□□□ 0.79
PCNX3-202ENST00000439247 ERCC6Q03468 1493 aa19.97■□□□□ 0.79
PCNX3-202ENST00000439247 GOLGA3Q08378 1498 aa19.94■□□□□ 0.78
PCNX3-202ENST00000439247 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
PCNX3-202ENST00000439247 SUPT16HQ9Y5B9 1047 aaKnown RBP19.91■□□□□ 0.78
PCNX3-202ENST00000439247 CUX2O14529 1486 aa19.91■□□□□ 0.78
PCNX3-202ENST00000439247 EEA1Q15075 1411 aa19.9■□□□□ 0.78
PCNX3-202ENST00000439247 KIF27Q86VH2 1401 aa19.86■□□□□ 0.77
PCNX3-202ENST00000439247 CLIP1P30622 1438 aa19.84■□□□□ 0.77
PCNX3-202ENST00000439247 THOC2Q8NI27 1593 aaKnown RBP19.81■□□□□ 0.76
PCNX3-202ENST00000439247 WDR62O43379 1518 aa19.81■□□□□ 0.76
PCNX3-202ENST00000439247 APLP2Q06481 763 aa19.81■□□□□ 0.76
PCNX3-202ENST00000439247 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
PCNX3-202ENST00000439247 TDRD9Q8NDG6 1382 aaKnown RBP19.8■□□□□ 0.76
PCNX3-202ENST00000439247 RAPGEF2Q9Y4G8 1499 aa19.77■□□□□ 0.76
PCNX3-202ENST00000439247 TSHZ2Q9NRE2 1034 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms