RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 AEBP2Q6ZN18 517 aaPredicted RBP14.99□□□□□ -0.01
ATG4A-204ENST00000372246 CHIC1Q5VXU3 224 aa14.41□□□□□ -0.1
ATG4A-204ENST00000372246 PHF23Q9BUL5 403 aaPredicted RBP12.69□□□□□ -0.38
ATG4A-204ENST00000372246 SENP3Q9H4L4 574 aaPredicted RBP12.68□□□□□ -0.38
ATG4A-204ENST00000372246 FOXD1Q16676 465 aa11.84□□□□□ -0.51
ATG4A-204ENST00000372246 PLPPR3Q6T4P5 718 aa11.57□□□□□ -0.56
ATG4A-204ENST00000372246 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.61
ATG4A-204ENST00000372246 ADRA2BP18089 450 aa11.2□□□□□ -0.62
ATG4A-204ENST00000372246 PIAS4Q8N2W9 510 aaPredicted RBP11.07□□□□□ -0.64
ATG4A-204ENST00000372246 MSH5O43196 834 aa10.94□□□□□ -0.66
ATG4A-204ENST00000372246 POTEDQ86YR6 584 aa10.36□□□□□ -0.75
ATG4A-204ENST00000372246 MAPK8IP2Q13387 824 aaPredicted RBP10.24□□□□□ -0.77
ATG4A-204ENST00000372246 PPP4R3CPQ6ZMV5 832 aa10.18□□□□□ -0.78
ATG4A-204ENST00000372246 SCAF1Q9H7N4 1312 aaKnown RBP10.18□□□□□ -0.78
ATG4A-204ENST00000372246 NISCHQ9Y2I1 1504 aa10.16□□□□□ -0.78
ATG4A-204ENST00000372246 DMRT2Q9Y5R5 561 aa10.11□□□□□ -0.79
ATG4A-204ENST00000372246 CNKSR2Q8WXI2 1034 aa9.93□□□□□ -0.82
ATG4A-204ENST00000372246 HOXD11P31277 338 aaPredicted RBP9.84□□□□□ -0.83
ATG4A-204ENST00000372246 NCBP3Q53F19 620 aaKnown RBP9.81□□□□□ -0.84
ATG4A-204ENST00000372246 RNF216Q9NWF9 866 aaPredicted RBP9.8□□□□□ -0.84
ATG4A-204ENST00000372246 KCNA4P22459 653 aa9.75□□□□□ -0.85
ATG4A-204ENST00000372246 NPM3O75607 178 aaKnown RBP9.74□□□□□ -0.85
ATG4A-204ENST00000372246 DCAF8L1A6NGE4 600 aa9.62□□□□□ -0.87
ATG4A-204ENST00000372246 DNAJC5BQ9UF47 199 aa9.51□□□□□ -0.89
ATG4A-204ENST00000372246 RNF39Q9H2S5 420 aa9.4□□□□□ -0.9
ATG4A-204ENST00000372246 SHROOM4Q9ULL8 1493 aa9.4□□□□□ -0.9
ATG4A-204ENST00000372246 SUPT5HO00267 1087 aaKnown RBP9.32□□□□□ -0.92
ATG4A-204ENST00000372246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.32□□□□□ -0.92
ATG4A-204ENST00000372246 PPARGC1BQ86YN6 1023 aaKnown RBP9.29□□□□□ -0.92
ATG4A-204ENST00000372246 SLC4A2P04920 1241 aa9.27□□□□□ -0.93
ATG4A-204ENST00000372246 CACNB1Q02641 598 aaPredicted RBP9.25□□□□□ -0.93
ATG4A-204ENST00000372246 C1QBPQ07021 282 aaKnown RBP9.25□□□□□ -0.93
ATG4A-204ENST00000372246 SLC4A1APQ9BWU0 796 aaKnown RBP9.21□□□□□ -0.94
ATG4A-204ENST00000372246 U3KPZ7 1027 aaPredicted RBP9.2□□□□□ -0.94
ATG4A-204ENST00000372246 HRCP23327 699 aa9.19□□□□□ -0.94
ATG4A-204ENST00000372246 PCGF6Q9BYE7 350 aa9.18□□□□□ -0.94
ATG4A-204ENST00000372246 MYO15BQ96JP2 1530 aa9.12□□□□□ -0.95
ATG4A-204ENST00000372246 ZBTB22O15209 634 aa9□□□□□ -0.97
ATG4A-204ENST00000372246 SPINK5Q9NQ38 1064 aaPredicted RBP9□□□□□ -0.97
ATG4A-204ENST00000372246 FOXD4L1Q9NU39 408 aa9□□□□□ -0.97
ATG4A-204ENST00000372246 LOC105371045A0A1W2PR82 267 aa8.97□□□□□ -0.97
ATG4A-204ENST00000372246 MYCNP04198 464 aaPredicted RBP8.96□□□□□ -0.98
ATG4A-204ENST00000372246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.94□□□□□ -0.98
ATG4A-204ENST00000372246 HNRNPUL2Q1KMD3 747 aaKnown RBP8.94□□□□□ -0.98
ATG4A-204ENST00000372246 CAPN15O75808 1086 aa8.92□□□□□ -0.98
ATG4A-204ENST00000372246 SAMD1Q6SPF0 538 aaPredicted RBP8.92□□□□□ -0.98
ATG4A-204ENST00000372246 DCAF8L2P0C7V8 631 aa8.9□□□□□ -0.99
ATG4A-204ENST00000372246 DSG3P32926 999 aa8.87□□□□□ -0.99
ATG4A-204ENST00000372246 APLP2Q06481 763 aa8.87□□□□□ -0.99
ATG4A-204ENST00000372246 TRHP20396 242 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-204ENST00000372246 EHMT2Q96KQ7 1210 aa8.83□□□□□ -1
ATG4A-204ENST00000372246 ZNF219Q9P2Y4 722 aaPredicted RBP8.83□□□□□ -1
ATG4A-204ENST00000372246 ATF5Q9Y2D1 282 aaPredicted RBP8.8□□□□□ -1
ATG4A-204ENST00000372246 PELP1Q8IZL8 1130 aaKnown RBP8.77□□□□□ -1.01
ATG4A-204ENST00000372246 ABCB7O75027 752 aa8.76□□□□□ -1.01
ATG4A-204ENST00000372246 CSRNP3Q8WYN3 585 aa8.76□□□□□ -1.01
ATG4A-204ENST00000372246 MYT1Q01538 1121 aa8.71□□□□□ -1.02
ATG4A-204ENST00000372246 ATXN8OSP0DMR3 200 aa8.7□□□□□ -1.02
ATG4A-204ENST00000372246 FAM9AQ8IZU1 332 aaPredicted RBP8.69□□□□□ -1.02
ATG4A-204ENST00000372246 TRIM26Q12899 539 aaPredicted RBP8.69□□□□□ -1.02
ATG4A-204ENST00000372246 POLA2Q14181 598 aa8.67□□□□□ -1.02
ATG4A-204ENST00000372246 DCAF1Q9Y4B6 1507 aa8.62□□□□□ -1.03
ATG4A-204ENST00000372246 ZCCHC6Q5VYS8 1495 aaKnown RBP8.61□□□□□ -1.03
ATG4A-204ENST00000372246 NEUROD1Q13562 356 aa8.57□□□□□ -1.04
ATG4A-204ENST00000372246 TTBK1Q5TCY1 1321 aaPredicted RBP8.56□□□□□ -1.04
ATG4A-204ENST00000372246 GTF3C3Q9Y5Q9 886 aa8.51□□□□□ -1.05
ATG4A-204ENST00000372246 CCDC180Q9P1Z9 1646 aa8.5□□□□□ -1.05
ATG4A-204ENST00000372246 ACIN1Q9UKV3 1341 aaKnown RBP8.47□□□□□ -1.05
ATG4A-204ENST00000372246 TRIM41Q8WV44 630 aa8.47□□□□□ -1.05
ATG4A-204ENST00000372246 ZBTB12Q9Y330 459 aaPredicted RBP8.47□□□□□ -1.05
ATG4A-204ENST00000372246 ZEB1P37275 1124 aaPredicted RBP8.45□□□□□ -1.06
ATG4A-204ENST00000372246 YTHDC1Q96MU7 727 aaKnown RBP8.44□□□□□ -1.06
ATG4A-204ENST00000372246 CCER1Q8TC90 406 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-204ENST00000372246 MKRN4PQ13434 485 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-204ENST00000372246 RBM42Q9BTD8 480 aaKnown RBP8.4□□□□□ -1.06
ATG4A-204ENST00000372246 OSCARQ8IYS5 282 aa8.39□□□□□ -1.07
ATG4A-204ENST00000372246 DIEXFQ68CQ4 756 aaKnown RBP8.39□□□□□ -1.07
ATG4A-204ENST00000372246 FBLN2P98095 1184 aa8.35□□□□□ -1.07
ATG4A-204ENST00000372246 AKT1S1Q96B36 256 aa8.28□□□□□ -1.08
ATG4A-204ENST00000372246 CENPBP07199 599 aaPredicted RBP8.28□□□□□ -1.08
ATG4A-204ENST00000372246 RB1CC1Q8TDY2 1594 aa8.27□□□□□ -1.09
ATG4A-204ENST00000372246 RSF1Q96T23 1441 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-204ENST00000372246 SPDYE2BA6NHP3 402 aa8.26□□□□□ -1.09
ATG4A-204ENST00000372246 SPDYE6P0CI01 402 aa8.26□□□□□ -1.09
ATG4A-204ENST00000372246 SPDYE2Q495Y8 402 aa8.26□□□□□ -1.09
ATG4A-204ENST00000372246 MIER1Q8N108 512 aa8.25□□□□□ -1.09
ATG4A-204ENST00000372246 REM2Q8IYK8 340 aaPredicted RBP8.22□□□□□ -1.09
ATG4A-204ENST00000372246 SSUH2Q9Y2M2 353 aa8.21□□□□□ -1.1
ATG4A-204ENST00000372246 SCRIBQ14160 1630 aa8.19□□□□□ -1.1
ATG4A-204ENST00000372246 ZNF692Q9BU19 519 aaPredicted RBP8.18□□□□□ -1.1
ATG4A-204ENST00000372246 ZNF316A6NFI3 1004 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-204ENST00000372246 SLC24A1O60721 1099 aa8.17□□□□□ -1.1
ATG4A-204ENST00000372246 CHRDL2Q6WN34 429 aa8.17□□□□□ -1.1
ATG4A-204ENST00000372246 ABCC9O60706 1549 aa8.17□□□□□ -1.1
ATG4A-204ENST00000372246 RANGAP1P46060 587 aaPredicted RBP8.15□□□□□ -1.1
ATG4A-204ENST00000372246 PRKCSHP14314 528 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-204ENST00000372246 POTEHQ6S545 545 aa8.14□□□□□ -1.11
ATG4A-204ENST00000372246 CECR2Q9BXF3 1484 aa8.14□□□□□ -1.11
ATG4A-204ENST00000372246 PITPNM1O00562 1244 aa8.13□□□□□ -1.11
ATG4A-204ENST00000372246 UBTFP17480 764 aaKnown RBP8.08□□□□□ -1.12
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