RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 AEBP2Q6ZN18 517 aaPredicted RBP24.37■■□□□ 1.49
ATG4A-202ENST00000345734 CHIC1Q5VXU3 224 aa24.31■■□□□ 1.48
ATG4A-202ENST00000345734 PHF23Q9BUL5 403 aaPredicted RBP21.59■■□□□ 1.05
ATG4A-202ENST00000345734 NISCHQ9Y2I1 1504 aa20.45■□□□□ 0.86
ATG4A-202ENST00000345734 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
ATG4A-202ENST00000345734 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
ATG4A-202ENST00000345734 ADRA2BP18089 450 aa19■□□□□ 0.63
ATG4A-202ENST00000345734 FOXD1Q16676 465 aa18.96■□□□□ 0.63
ATG4A-202ENST00000345734 PPP6R1Q9UPN7 881 aa18.89■□□□□ 0.61
ATG4A-202ENST00000345734 KCNA4P22459 653 aa18.31■□□□□ 0.52
ATG4A-202ENST00000345734 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
ATG4A-202ENST00000345734 EHMT2Q96KQ7 1210 aa17.99■□□□□ 0.47
ATG4A-202ENST00000345734 PPP4R3CPQ6ZMV5 832 aa17.8■□□□□ 0.44
ATG4A-202ENST00000345734 CCDC180Q9P1Z9 1646 aa17.71■□□□□ 0.42
ATG4A-202ENST00000345734 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
ATG4A-202ENST00000345734 NCBP3Q53F19 620 aaKnown RBP17.39■□□□□ 0.38
ATG4A-202ENST00000345734 NPM3O75607 178 aaKnown RBP17.32■□□□□ 0.36
ATG4A-202ENST00000345734 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
ATG4A-202ENST00000345734 ZCCHC6Q5VYS8 1495 aaKnown RBP17.21■□□□□ 0.35
ATG4A-202ENST00000345734 CNKSR2Q8WXI2 1034 aa17.06■□□□□ 0.32
ATG4A-202ENST00000345734 MSH5O43196 834 aa17.03■□□□□ 0.32
ATG4A-202ENST00000345734 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
ATG4A-202ENST00000345734 MAPK8IP2Q13387 824 aaPredicted RBP16.99■□□□□ 0.31
ATG4A-202ENST00000345734 DCAF8L2P0C7V8 631 aa16.95■□□□□ 0.3
ATG4A-202ENST00000345734 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
ATG4A-202ENST00000345734 ZBTB22O15209 634 aa16.9■□□□□ 0.3
ATG4A-202ENST00000345734 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
ATG4A-202ENST00000345734 ABCC9O60706 1549 aa16.71■□□□□ 0.27
ATG4A-202ENST00000345734 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
ATG4A-202ENST00000345734 RNF216Q9NWF9 866 aaPredicted RBP16.54■□□□□ 0.24
ATG4A-202ENST00000345734 FOXD4L1Q9NU39 408 aa16.49■□□□□ 0.23
ATG4A-202ENST00000345734 NACADO15069 1562 aa16.46■□□□□ 0.22
ATG4A-202ENST00000345734 SCRIBQ14160 1630 aa16.42■□□□□ 0.22
ATG4A-202ENST00000345734 DMRT2Q9Y5R5 561 aa16.38■□□□□ 0.21
ATG4A-202ENST00000345734 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
ATG4A-202ENST00000345734 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
ATG4A-202ENST00000345734 RB1CC1Q8TDY2 1594 aa16.29■□□□□ 0.2
ATG4A-202ENST00000345734 HOXD11P31277 338 aaPredicted RBP16.28■□□□□ 0.2
ATG4A-202ENST00000345734 SLC4A2P04920 1241 aa16.21■□□□□ 0.18
ATG4A-202ENST00000345734 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
ATG4A-202ENST00000345734 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
ATG4A-202ENST00000345734 CECR2Q9BXF3 1484 aa15.94■□□□□ 0.14
ATG4A-202ENST00000345734 MYCNP04198 464 aaPredicted RBP15.88■□□□□ 0.13
ATG4A-202ENST00000345734 DCAF8L1A6NGE4 600 aa15.88■□□□□ 0.13
ATG4A-202ENST00000345734 BICRAQ9NZM4 1560 aa15.86■□□□□ 0.13
ATG4A-202ENST00000345734 MROH2BQ7Z745 1585 aa15.85■□□□□ 0.13
ATG4A-202ENST00000345734 PABPN1Q86U42 306 aaKnown RBP eCLIP15.83■□□□□ 0.13
ATG4A-202ENST00000345734 WIZO95785 1651 aa15.75■□□□□ 0.11
ATG4A-202ENST00000345734 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
ATG4A-202ENST00000345734 SMARCA4P51532 1647 aa15.7■□□□□ 0.1
ATG4A-202ENST00000345734 ATXN8OSP0DMR3 200 aa15.69■□□□□ 0.1
ATG4A-202ENST00000345734 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.09
ATG4A-202ENST00000345734 FKBP8Q14318 412 aa15.64■□□□□ 0.09
ATG4A-202ENST00000345734 ATF5Q9Y2D1 282 aaPredicted RBP15.63■□□□□ 0.09
ATG4A-202ENST00000345734 RTN4Q9NQC3 1192 aaKnown RBP15.53■□□□□ 0.08
ATG4A-202ENST00000345734 TOP2AP11388 1531 aaKnown RBP15.52■□□□□ 0.08
ATG4A-202ENST00000345734 U3KPZ7 1027 aaPredicted RBP15.49■□□□□ 0.07
ATG4A-202ENST00000345734 PEG3Q9GZU2 1588 aa15.45■□□□□ 0.06
ATG4A-202ENST00000345734 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
ATG4A-202ENST00000345734 CCDC88BA6NC98 1476 aa15.41■□□□□ 0.06
ATG4A-202ENST00000345734 ATAD2BQ9ULI0 1458 aa15.39■□□□□ 0.05
ATG4A-202ENST00000345734 EIF4G1Q04637 1599 aaKnown RBP15.35■□□□□ 0.05
ATG4A-202ENST00000345734 SAMD1Q6SPF0 538 aaPredicted RBP15.35■□□□□ 0.05
ATG4A-202ENST00000345734 BAZ1BQ9UIG0 1483 aaKnown RBP15.32■□□□□ 0.04
ATG4A-202ENST00000345734 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.31■□□□□ 0.04
ATG4A-202ENST00000345734 HNRNPUL2Q1KMD3 747 aaKnown RBP15.31■□□□□ 0.04
ATG4A-202ENST00000345734 AMER1Q5JTC6 1135 aaPredicted RBP15.31■□□□□ 0.04
ATG4A-202ENST00000345734 TRIM41Q8WV44 630 aa15.31■□□□□ 0.04
ATG4A-202ENST00000345734 NCAPD3P42695 1498 aa15.2■□□□□ 0.02
ATG4A-202ENST00000345734 HMGXB3Q12766 1538 aa15.18■□□□□ 0.02
ATG4A-202ENST00000345734 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
ATG4A-202ENST00000345734 LOC105371045A0A1W2PR82 267 aa15.17■□□□□ 0.02
ATG4A-202ENST00000345734 ZNF219Q9P2Y4 722 aaPredicted RBP15.14■□□□□ 0.01
ATG4A-202ENST00000345734 FAM9AQ8IZU1 332 aaPredicted RBP15.11■□□□□ 0.01
ATG4A-202ENST00000345734 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
ATG4A-202ENST00000345734 SLC24A1O60721 1099 aa15.07■□□□□ 0
ATG4A-202ENST00000345734 WRNQ14191 1432 aaPredicted RBP eCLIP14.99□□□□□ -0.01
ATG4A-202ENST00000345734 SYNJ1O43426 1573 aa14.96□□□□□ -0.01
ATG4A-202ENST00000345734 SPINK5Q9NQ38 1064 aaPredicted RBP14.95□□□□□ -0.02
ATG4A-202ENST00000345734 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
ATG4A-202ENST00000345734 CFTRP13569 1480 aa14.93□□□□□ -0.02
ATG4A-202ENST00000345734 SOGA1O94964 1423 aa14.92□□□□□ -0.02
ATG4A-202ENST00000345734 APLP2Q06481 763 aa14.91□□□□□ -0.02
ATG4A-202ENST00000345734 MKRN4PQ13434 485 aaPredicted RBP14.91□□□□□ -0.02
ATG4A-202ENST00000345734 RUSC2Q8N2Y8 1516 aa14.87□□□□□ -0.03
ATG4A-202ENST00000345734 PRDM2Q13029 1718 aa14.87□□□□□ -0.03
ATG4A-202ENST00000345734 SPDYE4A6NLX3 237 aa14.86□□□□□ -0.03
ATG4A-202ENST00000345734 TOP2BQ02880 1626 aa14.85□□□□□ -0.03
ATG4A-202ENST00000345734 CADPSQ9ULU8 1353 aa14.84□□□□□ -0.03
ATG4A-202ENST00000345734 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
ATG4A-202ENST00000345734 POLA2Q14181 598 aa14.81□□□□□ -0.04
ATG4A-202ENST00000345734 CUX1P39880 1505 aa14.8□□□□□ -0.04
ATG4A-202ENST00000345734 EEA1Q15075 1411 aa14.8□□□□□ -0.04
ATG4A-202ENST00000345734 CAPN15O75808 1086 aa14.8□□□□□ -0.04
ATG4A-202ENST00000345734 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
ATG4A-202ENST00000345734 NESP48681 1621 aa14.74□□□□□ -0.05
ATG4A-202ENST00000345734 FBLN2P98095 1184 aa14.7□□□□□ -0.06
ATG4A-202ENST00000345734 FANCD2Q9BXW9 1451 aa14.7□□□□□ -0.06
ATG4A-202ENST00000345734 ABCB7O75027 752 aa14.67□□□□□ -0.06
ATG4A-202ENST00000345734 FBXO3Q9UK99 471 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms