RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 AEBP2Q6ZN18 517 aaPredicted RBP21.6■■□□□ 1.05
ATG4A-201ENST00000343524 CHIC1Q5VXU3 224 aa20.41■□□□□ 0.86
ATG4A-201ENST00000343524 SENP3Q9H4L4 574 aaPredicted RBP18.38■□□□□ 0.53
ATG4A-201ENST00000343524 PHF23Q9BUL5 403 aaPredicted RBP18.14■□□□□ 0.49
ATG4A-201ENST00000343524 FOXD1Q16676 465 aa17.17■□□□□ 0.34
ATG4A-201ENST00000343524 PLPPR3Q6T4P5 718 aa16.23■□□□□ 0.19
ATG4A-201ENST00000343524 MSH5O43196 834 aa16.06■□□□□ 0.16
ATG4A-201ENST00000343524 PPP6R1Q9UPN7 881 aa16.02■□□□□ 0.15
ATG4A-201ENST00000343524 PIAS4Q8N2W9 510 aaPredicted RBP15.98■□□□□ 0.15
ATG4A-201ENST00000343524 ADRA2BP18089 450 aa15.93■□□□□ 0.14
ATG4A-201ENST00000343524 POTEDQ86YR6 584 aa15.86■□□□□ 0.13
ATG4A-201ENST00000343524 NISCHQ9Y2I1 1504 aa15.42■□□□□ 0.06
ATG4A-201ENST00000343524 ABCC9O60706 1549 aa14.97□□□□□ -0.01
ATG4A-201ENST00000343524 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
ATG4A-201ENST00000343524 MAPK8IP2Q13387 824 aaPredicted RBP14.67□□□□□ -0.06
ATG4A-201ENST00000343524 DMRT2Q9Y5R5 561 aa14.59□□□□□ -0.07
ATG4A-201ENST00000343524 SCAF1Q9H7N4 1312 aaKnown RBP14.51□□□□□ -0.09
ATG4A-201ENST00000343524 DNAJC5Q9H3Z4 198 aa14.24□□□□□ -0.13
ATG4A-201ENST00000343524 PPP4R3CPQ6ZMV5 832 aa14.23□□□□□ -0.13
ATG4A-201ENST00000343524 CCDC180Q9P1Z9 1646 aa14.2□□□□□ -0.14
ATG4A-201ENST00000343524 HOXD11P31277 338 aaPredicted RBP14.03□□□□□ -0.16
ATG4A-201ENST00000343524 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
ATG4A-201ENST00000343524 PELP1Q8IZL8 1130 aaKnown RBP13.96□□□□□ -0.18
ATG4A-201ENST00000343524 RB1CC1Q8TDY2 1594 aa13.91□□□□□ -0.18
ATG4A-201ENST00000343524 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
ATG4A-201ENST00000343524 RNF216Q9NWF9 866 aaPredicted RBP13.88□□□□□ -0.19
ATG4A-201ENST00000343524 CACNB1Q02641 598 aaPredicted RBP13.82□□□□□ -0.2
ATG4A-201ENST00000343524 PABPN1Q86U42 306 aaKnown RBP eCLIP13.79□□□□□ -0.2
ATG4A-201ENST00000343524 RNF39Q9H2S5 420 aa13.73□□□□□ -0.21
ATG4A-201ENST00000343524 HRCP23327 699 aa13.7□□□□□ -0.22
ATG4A-201ENST00000343524 NACADO15069 1562 aa13.64□□□□□ -0.23
ATG4A-201ENST00000343524 MYT1Q01538 1121 aa13.63□□□□□ -0.23
ATG4A-201ENST00000343524 NCBP3Q53F19 620 aaKnown RBP13.61□□□□□ -0.23
ATG4A-201ENST00000343524 CECR2Q9BXF3 1484 aa13.59□□□□□ -0.23
ATG4A-201ENST00000343524 UNC13AQ9UPW8 1703 aa13.57□□□□□ -0.24
ATG4A-201ENST00000343524 BICRAQ9NZM4 1560 aa13.55□□□□□ -0.24
ATG4A-201ENST00000343524 C1QBPQ07021 282 aaKnown RBP13.51□□□□□ -0.25
ATG4A-201ENST00000343524 CC2D2AQ9P2K1 1620 aa13.5□□□□□ -0.25
ATG4A-201ENST00000343524 NPM3O75607 178 aaKnown RBP13.48□□□□□ -0.25
ATG4A-201ENST00000343524 SHROOM4Q9ULL8 1493 aa13.32□□□□□ -0.28
ATG4A-201ENST00000343524 CUX2O14529 1486 aa13.3□□□□□ -0.28
ATG4A-201ENST00000343524 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.3□□□□□ -0.28
ATG4A-201ENST00000343524 DCAF8L2P0C7V8 631 aa13.28□□□□□ -0.28
ATG4A-201ENST00000343524 EIF4G1Q04637 1599 aaKnown RBP13.27□□□□□ -0.29
ATG4A-201ENST00000343524 MYO15BQ96JP2 1530 aa13.2□□□□□ -0.3
ATG4A-201ENST00000343524 TRIM41Q8WV44 630 aa13.19□□□□□ -0.3
ATG4A-201ENST00000343524 KCNA4P22459 653 aa13.14□□□□□ -0.31
ATG4A-201ENST00000343524 DCAF1Q9Y4B6 1507 aa13.1□□□□□ -0.31
ATG4A-201ENST00000343524 PCGF6Q9BYE7 350 aa13.1□□□□□ -0.31
ATG4A-201ENST00000343524 PPARGC1BQ86YN6 1023 aaKnown RBP13.08□□□□□ -0.32
ATG4A-201ENST00000343524 U3KPZ7 1027 aaPredicted RBP13.07□□□□□ -0.32
ATG4A-201ENST00000343524 ZEB1P37275 1124 aaPredicted RBP13.01□□□□□ -0.33
ATG4A-201ENST00000343524 ERCC6Q03468 1493 aa12.98□□□□□ -0.33
ATG4A-201ENST00000343524 TTBK1Q5TCY1 1321 aaPredicted RBP12.93□□□□□ -0.34
ATG4A-201ENST00000343524 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
ATG4A-201ENST00000343524 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.35
ATG4A-201ENST00000343524 SCRIBQ14160 1630 aa12.86□□□□□ -0.35
ATG4A-201ENST00000343524 TRIM26Q12899 539 aaPredicted RBP12.84□□□□□ -0.35
ATG4A-201ENST00000343524 DSG3P32926 999 aa12.83□□□□□ -0.36
ATG4A-201ENST00000343524 CAPN15O75808 1086 aa12.82□□□□□ -0.36
ATG4A-201ENST00000343524 SUPT5HO00267 1087 aaKnown RBP12.81□□□□□ -0.36
ATG4A-201ENST00000343524 ACIN1Q9UKV3 1341 aaKnown RBP12.72□□□□□ -0.37
ATG4A-201ENST00000343524 THOC2Q8NI27 1593 aaKnown RBP12.69□□□□□ -0.38
ATG4A-201ENST00000343524 CENPBP07199 599 aaPredicted RBP12.66□□□□□ -0.38
ATG4A-201ENST00000343524 NESP48681 1621 aa12.62□□□□□ -0.39
ATG4A-201ENST00000343524 APLP2Q06481 763 aa12.62□□□□□ -0.39
ATG4A-201ENST00000343524 NCAPD3P42695 1498 aa12.61□□□□□ -0.39
ATG4A-201ENST00000343524 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.6□□□□□ -0.39
ATG4A-201ENST00000343524 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
ATG4A-201ENST00000343524 HNRNPUL2Q1KMD3 747 aaKnown RBP12.6□□□□□ -0.39
ATG4A-201ENST00000343524 ZCCHC6Q5VYS8 1495 aaKnown RBP12.59□□□□□ -0.39
ATG4A-201ENST00000343524 ZNF219Q9P2Y4 722 aaPredicted RBP12.58□□□□□ -0.39
ATG4A-201ENST00000343524 ABCB7O75027 752 aa12.54□□□□□ -0.4
ATG4A-201ENST00000343524 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
ATG4A-201ENST00000343524 OSCARQ8IYS5 282 aa12.52□□□□□ -0.4
ATG4A-201ENST00000343524 GTF3C3Q9Y5Q9 886 aa12.52□□□□□ -0.41
ATG4A-201ENST00000343524 NEUROD1Q13562 356 aa12.51□□□□□ -0.41
ATG4A-201ENST00000343524 BAZ1AQ9NRL2 1556 aaPredicted RBP12.51□□□□□ -0.41
ATG4A-201ENST00000343524 SMARCA2P51531 1590 aa12.49□□□□□ -0.41
ATG4A-201ENST00000343524 RIMBP3CA6NJZ7 1639 aa12.45□□□□□ -0.42
ATG4A-201ENST00000343524 RIMBP3BA6NNM3 1639 aa12.45□□□□□ -0.42
ATG4A-201ENST00000343524 RIMBP3Q9UFD9 1639 aa12.45□□□□□ -0.42
ATG4A-201ENST00000343524 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
ATG4A-201ENST00000343524 LAMC3Q9Y6N6 1575 aa12.43□□□□□ -0.42
ATG4A-201ENST00000343524 ATAD2BQ9ULI0 1458 aa12.43□□□□□ -0.42
ATG4A-201ENST00000343524 KIF21AQ7Z4S6 1674 aa12.42□□□□□ -0.42
ATG4A-201ENST00000343524 HMGXB3Q12766 1538 aa12.42□□□□□ -0.42
ATG4A-201ENST00000343524 POTEHQ6S545 545 aa12.39□□□□□ -0.43
ATG4A-201ENST00000343524 PDS5BQ9NTI5 1447 aa12.39□□□□□ -0.43
ATG4A-201ENST00000343524 SLC4A1APQ9BWU0 796 aaKnown RBP12.36□□□□□ -0.43
ATG4A-201ENST00000343524 LOC105371045A0A1W2PR82 267 aa12.35□□□□□ -0.43
ATG4A-201ENST00000343524 MRC2Q9UBG0 1479 aa12.33□□□□□ -0.44
ATG4A-201ENST00000343524 WDR62O43379 1518 aa12.33□□□□□ -0.44
ATG4A-201ENST00000343524 ARHGEF11O15085 1522 aa12.32□□□□□ -0.44
ATG4A-201ENST00000343524 DIEXFQ68CQ4 756 aaKnown RBP12.32□□□□□ -0.44
ATG4A-201ENST00000343524 CLSPNQ9HAW4 1339 aa12.31□□□□□ -0.44
ATG4A-201ENST00000343524 ILDR1Q86SU0 546 aaPredicted RBP12.29□□□□□ -0.44
ATG4A-201ENST00000343524 FOXD4L1Q9NU39 408 aa12.27□□□□□ -0.44
ATG4A-201ENST00000343524 POLA2Q14181 598 aa12.27□□□□□ -0.45
ATG4A-201ENST00000343524 BCL11AQ9H165 835 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms