RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
ATG4A-203ENST00000372232 AEBP2Q6ZN18 517 aaPredicted RBP20.07■□□□□ 0.8
ATG4A-203ENST00000372232 PHF23Q9BUL5 403 aaPredicted RBP18.46■□□□□ 0.55
ATG4A-203ENST00000372232 NISCHQ9Y2I1 1504 aa17.82■□□□□ 0.44
ATG4A-203ENST00000372232 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
ATG4A-203ENST00000372232 PLPPR3Q6T4P5 718 aa17.23■□□□□ 0.35
ATG4A-203ENST00000372232 KCNA4P22459 653 aa16.71■□□□□ 0.27
ATG4A-203ENST00000372232 SENP3Q9H4L4 574 aaPredicted RBP16.51■□□□□ 0.23
ATG4A-203ENST00000372232 ADRA2BP18089 450 aa16.45■□□□□ 0.22
ATG4A-203ENST00000372232 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
ATG4A-203ENST00000372232 SLC24A1O60721 1099 aa16.25■□□□□ 0.19
ATG4A-203ENST00000372232 SLC4A1APQ9BWU0 796 aaKnown RBP16■□□□□ 0.15
ATG4A-203ENST00000372232 PPP6R1Q9UPN7 881 aa15.94■□□□□ 0.14
ATG4A-203ENST00000372232 RTN4Q9NQC3 1192 aaKnown RBP15.76■□□□□ 0.11
ATG4A-203ENST00000372232 ZBTB22O15209 634 aa15.49■□□□□ 0.07
ATG4A-203ENST00000372232 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
ATG4A-203ENST00000372232 PPP4R3CPQ6ZMV5 832 aa15.45■□□□□ 0.06
ATG4A-203ENST00000372232 AMER1Q5JTC6 1135 aaPredicted RBP15.44■□□□□ 0.06
ATG4A-203ENST00000372232 FOXD1Q16676 465 aa15.38■□□□□ 0.05
ATG4A-203ENST00000372232 NPM3O75607 178 aaKnown RBP15.26■□□□□ 0.03
ATG4A-203ENST00000372232 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
ATG4A-203ENST00000372232 NCBP3Q53F19 620 aaKnown RBP15.2■□□□□ 0.02
ATG4A-203ENST00000372232 MYT1Q01538 1121 aa15.15■□□□□ 0.02
ATG4A-203ENST00000372232 ZCCHC6Q5VYS8 1495 aaKnown RBP15.04■□□□□ -0
ATG4A-203ENST00000372232 SHROOM4Q9ULL8 1493 aa14.93□□□□□ -0.02
ATG4A-203ENST00000372232 HRCP23327 699 aa14.82□□□□□ -0.04
ATG4A-203ENST00000372232 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
ATG4A-203ENST00000372232 PIAS4Q8N2W9 510 aaPredicted RBP14.8□□□□□ -0.04
ATG4A-203ENST00000372232 ABCC9O60706 1549 aa14.73□□□□□ -0.05
ATG4A-203ENST00000372232 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
ATG4A-203ENST00000372232 FKBP8Q14318 412 aa14.69□□□□□ -0.06
ATG4A-203ENST00000372232 DCAF1Q9Y4B6 1507 aa14.69□□□□□ -0.06
ATG4A-203ENST00000372232 CNKSR2Q8WXI2 1034 aa14.61□□□□□ -0.07
ATG4A-203ENST00000372232 SUPT5HO00267 1087 aaKnown RBP14.57□□□□□ -0.08
ATG4A-203ENST00000372232 TTBK1Q5TCY1 1321 aaPredicted RBP14.5□□□□□ -0.09
ATG4A-203ENST00000372232 PRKCSHP14314 528 aaPredicted RBP14.5□□□□□ -0.09
ATG4A-203ENST00000372232 SCAF1Q9H7N4 1312 aaKnown RBP14.36□□□□□ -0.11
ATG4A-203ENST00000372232 MYO15BQ96JP2 1530 aa14.36□□□□□ -0.11
ATG4A-203ENST00000372232 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
ATG4A-203ENST00000372232 PLCB2Q00722 1185 aa14.29□□□□□ -0.12
ATG4A-203ENST00000372232 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
ATG4A-203ENST00000372232 NACADO15069 1562 aa14.21□□□□□ -0.13
ATG4A-203ENST00000372232 RB1CC1Q8TDY2 1594 aa14.2□□□□□ -0.14
ATG4A-203ENST00000372232 SCRIBQ14160 1630 aa14.19□□□□□ -0.14
ATG4A-203ENST00000372232 HAP1P54257 671 aaPredicted RBP14.16□□□□□ -0.14
ATG4A-203ENST00000372232 MAPK8IP2Q13387 824 aaPredicted RBP14.16□□□□□ -0.14
ATG4A-203ENST00000372232 TAOK2Q9UL54 1235 aa14.16□□□□□ -0.14
ATG4A-203ENST00000372232 SLC4A2P04920 1241 aa14.14□□□□□ -0.15
ATG4A-203ENST00000372232 BCANQ96GW7 911 aa14.11□□□□□ -0.15
ATG4A-203ENST00000372232 RSF1Q96T23 1441 aaPredicted RBP14.02□□□□□ -0.17
ATG4A-203ENST00000372232 PCGF6Q9BYE7 350 aa14.01□□□□□ -0.17
ATG4A-203ENST00000372232 RNF216Q9NWF9 866 aaPredicted RBP14.01□□□□□ -0.17
ATG4A-203ENST00000372232 ATXN8OSP0DMR3 200 aa13.98□□□□□ -0.17
ATG4A-203ENST00000372232 TPRNQ4KMQ1 711 aa13.98□□□□□ -0.17
ATG4A-203ENST00000372232 MYCNP04198 464 aaPredicted RBP13.91□□□□□ -0.18
ATG4A-203ENST00000372232 BCL11AQ9H165 835 aa13.9□□□□□ -0.18
ATG4A-203ENST00000372232 UNC13AQ9UPW8 1703 aa13.89□□□□□ -0.19
ATG4A-203ENST00000372232 CECR2Q9BXF3 1484 aa13.87□□□□□ -0.19
ATG4A-203ENST00000372232 ACIN1Q9UKV3 1341 aaKnown RBP13.83□□□□□ -0.2
ATG4A-203ENST00000372232 MROH2BQ7Z745 1585 aa13.81□□□□□ -0.2
ATG4A-203ENST00000372232 BICRAQ9NZM4 1560 aa13.79□□□□□ -0.2
ATG4A-203ENST00000372232 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.2
ATG4A-203ENST00000372232 TIMELESSQ9UNS1 1208 aa13.78□□□□□ -0.2
ATG4A-203ENST00000372232 VSIG10Q8N0Z9 540 aa13.77□□□□□ -0.21
ATG4A-203ENST00000372232 ATF5Q9Y2D1 282 aaPredicted RBP13.76□□□□□ -0.21
ATG4A-203ENST00000372232 KDM2AQ9Y2K7 1162 aa13.75□□□□□ -0.21
ATG4A-203ENST00000372232 FAM9AQ8IZU1 332 aaPredicted RBP13.75□□□□□ -0.21
ATG4A-203ENST00000372232 CENPBP07199 599 aaPredicted RBP13.73□□□□□ -0.21
ATG4A-203ENST00000372232 ZEB1P37275 1124 aaPredicted RBP13.72□□□□□ -0.21
ATG4A-203ENST00000372232 FBLN2P98095 1184 aa13.71□□□□□ -0.21
ATG4A-203ENST00000372232 BAZ1AQ9NRL2 1556 aaPredicted RBP13.71□□□□□ -0.21
ATG4A-203ENST00000372232 WIZO95785 1651 aa13.7□□□□□ -0.22
ATG4A-203ENST00000372232 NEUROD1Q13562 356 aa13.69□□□□□ -0.22
ATG4A-203ENST00000372232 ERICH6Q7L0X2 663 aa13.69□□□□□ -0.22
ATG4A-203ENST00000372232 GTF3C3Q9Y5Q9 886 aa13.68□□□□□ -0.22
ATG4A-203ENST00000372232 LOC105371045A0A1W2PR82 267 aa13.65□□□□□ -0.22
ATG4A-203ENST00000372232 TULP1O00294 542 aaPredicted RBP13.65□□□□□ -0.22
ATG4A-203ENST00000372232 APLP2Q06481 763 aa13.64□□□□□ -0.23
ATG4A-203ENST00000372232 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
ATG4A-203ENST00000372232 DAXXQ9UER7 740 aaPredicted RBP13.64□□□□□ -0.23
ATG4A-203ENST00000372232 HOXD11P31277 338 aaPredicted RBP13.63□□□□□ -0.23
ATG4A-203ENST00000372232 SMARCA4P51532 1647 aa13.59□□□□□ -0.23
ATG4A-203ENST00000372232 PKD2Q13563 968 aa13.55□□□□□ -0.24
ATG4A-203ENST00000372232 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
ATG4A-203ENST00000372232 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
ATG4A-203ENST00000372232 FBXO3Q9UK99 471 aa13.51□□□□□ -0.25
ATG4A-203ENST00000372232 TRIM26Q12899 539 aaPredicted RBP13.51□□□□□ -0.25
ATG4A-203ENST00000372232 VASPP50552 380 aaPredicted RBP13.5□□□□□ -0.25
ATG4A-203ENST00000372232 EIF4G1Q04637 1599 aaKnown RBP13.47□□□□□ -0.25
ATG4A-203ENST00000372232 CCDC88BA6NC98 1476 aa13.47□□□□□ -0.25
ATG4A-203ENST00000372232 ANP32EQ9BTT0 268 aa13.46□□□□□ -0.25
ATG4A-203ENST00000372232 PAXIP1Q6ZW49 1069 aaPredicted RBP13.46□□□□□ -0.26
ATG4A-203ENST00000372232 SMARCA2P51531 1590 aa13.44□□□□□ -0.26
ATG4A-203ENST00000372232 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
ATG4A-203ENST00000372232 DMRT2Q9Y5R5 561 aa13.42□□□□□ -0.26
ATG4A-203ENST00000372232 NPM1P06748 294 aaKnown RBP eCLIP13.41□□□□□ -0.26
ATG4A-203ENST00000372232 ARXQ96QS3 562 aa13.41□□□□□ -0.26
ATG4A-203ENST00000372232 MSH5O43196 834 aa13.41□□□□□ -0.26
ATG4A-203ENST00000372232 PEG3Q9GZU2 1588 aa13.4□□□□□ -0.26
ATG4A-203ENST00000372232 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms