Protein–RNA interactions for Protein: O60391

GRIN3B, Glutamate receptor ionotropic, NMDA 3B, humanhuman

Predictions only

Length 1,043 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GRIN3BO60391 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.61■■■■□ 3.29
GRIN3BO60391 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.6■■■■□ 3.29
GRIN3BO60391 AC087741.3-201ENST00000624270 1347 ntBASIC35.59■■■■□ 3.29
GRIN3BO60391 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.59■■■■□ 3.29
GRIN3BO60391 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC35.57■■■■□ 3.28
GRIN3BO60391 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.54■■■■□ 3.28
GRIN3BO60391 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.53■■■■□ 3.28
GRIN3BO60391 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.52■■■■□ 3.28
GRIN3BO60391 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.52■■■■□ 3.28
GRIN3BO60391 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.51■■■■□ 3.28
GRIN3BO60391 AC044849.2-201ENST00000606596 710 ntBASIC35.49■■■■□ 3.27
GRIN3BO60391 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
GRIN3BO60391 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
GRIN3BO60391 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.46■■■■□ 3.27
GRIN3BO60391 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.46■■■■□ 3.27
GRIN3BO60391 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC35.44■■■■□ 3.26
GRIN3BO60391 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC35.44■■■■□ 3.26
GRIN3BO60391 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.44■■■■□ 3.26
GRIN3BO60391 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.4■■■■□ 3.26
GRIN3BO60391 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC35.4■■■■□ 3.26
GRIN3BO60391 DUX4L28-201ENST00000623687 678 ntBASIC35.39■■■■□ 3.26
GRIN3BO60391 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
GRIN3BO60391 ZNRF2P2-203ENST00000454624 420 ntBASIC35.36■■■■□ 3.25
GRIN3BO60391 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.36■■■■□ 3.25
GRIN3BO60391 AL133380.1-201ENST00000506013 324 ntBASIC35.35■■■■□ 3.25
GRIN3BO60391 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC35.31■■■■□ 3.24
GRIN3BO60391 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.3■■■■□ 3.24
GRIN3BO60391 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.3■■■■□ 3.24
GRIN3BO60391 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC35.3■■■■□ 3.24
GRIN3BO60391 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
GRIN3BO60391 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
GRIN3BO60391 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
GRIN3BO60391 MVK-208ENST00000539696 608 ntTSL 5 BASIC35.27■■■■□ 3.24
GRIN3BO60391 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC35.26■■■■□ 3.24
GRIN3BO60391 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
GRIN3BO60391 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.25■■■■□ 3.23
GRIN3BO60391 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.24■■■■□ 3.23
GRIN3BO60391 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
GRIN3BO60391 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
GRIN3BO60391 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
GRIN3BO60391 MIR4449-201ENST00000578365 66 ntBASIC35.18■■■■□ 3.22
GRIN3BO60391 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
GRIN3BO60391 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
GRIN3BO60391 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.15■■■■□ 3.22
GRIN3BO60391 AC005559.1-201ENST00000589661 871 ntBASIC35.13■■■■□ 3.21
GRIN3BO60391 MIR762-201ENST00000390236 83 ntBASIC35.12■■■■□ 3.21
GRIN3BO60391 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.12■■■■□ 3.21
GRIN3BO60391 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
GRIN3BO60391 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.11■■■■□ 3.21
GRIN3BO60391 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
GRIN3BO60391 RPS2-202ENST00000526522 924 ntTSL 2 BASIC35.08■■■■□ 3.21
GRIN3BO60391 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC35.07■■■■□ 3.2
GRIN3BO60391 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
GRIN3BO60391 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
GRIN3BO60391 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC35.02■■■■□ 3.2
GRIN3BO60391 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35■■■■□ 3.19
GRIN3BO60391 AC145285.7-201ENST00000614819 1539 ntBASIC34.97■■■■□ 3.19
GRIN3BO60391 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.97■■■■□ 3.19
GRIN3BO60391 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
GRIN3BO60391 MIR639-201ENST00000384974 98 ntBASIC34.95■■■■□ 3.19
GRIN3BO60391 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC34.95■■■■□ 3.19
GRIN3BO60391 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC34.95■■■■□ 3.18
GRIN3BO60391 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
GRIN3BO60391 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
GRIN3BO60391 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
GRIN3BO60391 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.9■■■■□ 3.18
GRIN3BO60391 HSD17B1P1-201ENST00000590052 955 ntBASIC34.9■■■■□ 3.18
GRIN3BO60391 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.89■■■■□ 3.18
GRIN3BO60391 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.89■■■■□ 3.18
GRIN3BO60391 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
GRIN3BO60391 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC34.88■■■■□ 3.17
GRIN3BO60391 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
GRIN3BO60391 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.87■■■■□ 3.17
GRIN3BO60391 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC34.85■■■■□ 3.17
GRIN3BO60391 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC34.85■■■■□ 3.17
GRIN3BO60391 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
GRIN3BO60391 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.83■■■■□ 3.17
GRIN3BO60391 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.82■■■■□ 3.16
GRIN3BO60391 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
GRIN3BO60391 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.81■■■■□ 3.16
GRIN3BO60391 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
GRIN3BO60391 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
GRIN3BO60391 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.8■■■■□ 3.16
GRIN3BO60391 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC34.78■■■■□ 3.16
GRIN3BO60391 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.78■■■■□ 3.16
GRIN3BO60391 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC34.78■■■■□ 3.16
GRIN3BO60391 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.78■■■■□ 3.16
GRIN3BO60391 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC34.75■■■■□ 3.15
GRIN3BO60391 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC34.74■■■■□ 3.15
GRIN3BO60391 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.71■■■■□ 3.15
GRIN3BO60391 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
GRIN3BO60391 DUX4L29-201ENST00000425409 679 ntBASIC34.69■■■■□ 3.14
GRIN3BO60391 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC34.69■■■■□ 3.14
GRIN3BO60391 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.68■■■■□ 3.14
GRIN3BO60391 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.68■■■■□ 3.14
GRIN3BO60391 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.67■■■■□ 3.14
GRIN3BO60391 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.64■■■■□ 3.14
GRIN3BO60391 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.61■■■■□ 3.13
GRIN3BO60391 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
GRIN3BO60391 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms