Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AP006261.1-201ENST00000584783 668 ntBASIC35.47■■■■□ 3.27
NPHP1O15259 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.46■■■■□ 3.27
NPHP1O15259 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.45■■■■□ 3.27
NPHP1O15259 AL133380.1-201ENST00000506013 324 ntBASIC35.43■■■■□ 3.26
NPHP1O15259 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC35.38■■■■□ 3.25
NPHP1O15259 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.38■■■■□ 3.25
NPHP1O15259 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
NPHP1O15259 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
NPHP1O15259 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
NPHP1O15259 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.37■■■■□ 3.25
NPHP1O15259 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.36■■■■□ 3.25
NPHP1O15259 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
NPHP1O15259 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.32■■■■□ 3.24
NPHP1O15259 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.31■■■■□ 3.24
NPHP1O15259 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.31■■■■□ 3.24
NPHP1O15259 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.31■■■■□ 3.24
NPHP1O15259 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.31■■■■□ 3.24
NPHP1O15259 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.3■■■■□ 3.24
NPHP1O15259 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.29■■■■□ 3.24
NPHP1O15259 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.29■■■■□ 3.24
NPHP1O15259 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
NPHP1O15259 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.26■■■■□ 3.24
NPHP1O15259 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
NPHP1O15259 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.25■■■■□ 3.23
NPHP1O15259 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
NPHP1O15259 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.24■■■■□ 3.23
NPHP1O15259 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC35.23■■■■□ 3.23
NPHP1O15259 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
NPHP1O15259 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
NPHP1O15259 MIR3665-201ENST00000578708 105 ntBASIC35.18■■■■□ 3.22
NPHP1O15259 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
NPHP1O15259 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.15■■■■□ 3.22
NPHP1O15259 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.14■■■■□ 3.22
NPHP1O15259 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.13■■■■□ 3.21
NPHP1O15259 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.13■■■■□ 3.21
NPHP1O15259 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.12■■■■□ 3.21
NPHP1O15259 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC35.08■■■■□ 3.21
NPHP1O15259 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
NPHP1O15259 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
NPHP1O15259 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
NPHP1O15259 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.05■■■■□ 3.2
NPHP1O15259 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
NPHP1O15259 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
NPHP1O15259 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
NPHP1O15259 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.03■■■■□ 3.2
NPHP1O15259 MIR7108-201ENST00000614319 87 ntBASIC35.02■■■■□ 3.2
NPHP1O15259 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.01■■■■□ 3.2
NPHP1O15259 ABHD17AP4-201ENST00000411545 909 ntBASIC35.01■■■■□ 3.2
NPHP1O15259 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
NPHP1O15259 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35■■■■□ 3.19
NPHP1O15259 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC34.98■■■■□ 3.19
NPHP1O15259 AC087741.3-201ENST00000624270 1347 ntBASIC34.97■■■■□ 3.19
NPHP1O15259 DUX4L28-201ENST00000623687 678 ntBASIC34.96■■■■□ 3.19
NPHP1O15259 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.96■■■■□ 3.19
NPHP1O15259 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
NPHP1O15259 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC34.95■■■■□ 3.19
NPHP1O15259 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
NPHP1O15259 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC34.93■■■■□ 3.18
NPHP1O15259 MIR762-201ENST00000390236 83 ntBASIC34.93■■■■□ 3.18
NPHP1O15259 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
NPHP1O15259 MLEC-202ENST00000412616 841 ntTSL 3 BASIC34.92■■■■□ 3.18
NPHP1O15259 AC044849.2-201ENST00000606596 710 ntBASIC34.92■■■■□ 3.18
NPHP1O15259 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
NPHP1O15259 AC005559.1-201ENST00000589661 871 ntBASIC34.91■■■■□ 3.18
NPHP1O15259 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.9■■■■□ 3.18
NPHP1O15259 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
NPHP1O15259 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC34.9■■■■□ 3.18
NPHP1O15259 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC34.9■■■■□ 3.18
NPHP1O15259 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.9■■■■□ 3.18
NPHP1O15259 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
NPHP1O15259 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
NPHP1O15259 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
NPHP1O15259 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC34.85■■■■□ 3.17
NPHP1O15259 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.84■■■■□ 3.17
NPHP1O15259 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
NPHP1O15259 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
NPHP1O15259 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC34.81■■■■□ 3.16
NPHP1O15259 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
NPHP1O15259 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC34.79■■■■□ 3.16
NPHP1O15259 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC34.77■■■■□ 3.16
NPHP1O15259 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC34.75■■■■□ 3.15
NPHP1O15259 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
NPHP1O15259 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
NPHP1O15259 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
NPHP1O15259 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
NPHP1O15259 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.73■■■■□ 3.15
NPHP1O15259 HLA-V-202ENST00000446817 847 ntBASIC34.69■■■■□ 3.14
NPHP1O15259 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC34.68■■■■□ 3.14
NPHP1O15259 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.68■■■■□ 3.14
NPHP1O15259 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC34.67■■■■□ 3.14
NPHP1O15259 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC34.67■■■■□ 3.14
NPHP1O15259 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
NPHP1O15259 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
NPHP1O15259 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
NPHP1O15259 DENR-202ENST00000455982 1052 ntTSL 5 BASIC34.64■■■■□ 3.14
NPHP1O15259 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.64■■■■□ 3.14
NPHP1O15259 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.63■■■■□ 3.13
NPHP1O15259 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.63■■■■□ 3.13
NPHP1O15259 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.63■■■■□ 3.13
NPHP1O15259 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC34.63■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms