Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
SENP3-EIF4A1A0A087X0R7 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
SENP3-EIF4A1A0A087X0R7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC37.33■■■■□ 3.57
SENP3-EIF4A1A0A087X0R7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC37.33■■■■□ 3.57
SENP3-EIF4A1A0A087X0R7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC37.3■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC37.3■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC37.28■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 AL031258.1-201ENST00000623562 325 ntBASIC37.27■■■■□ 3.56
SENP3-EIF4A1A0A087X0R7 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC37.23■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC37.22■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC37.21■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC37.2■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC37.2■■■■□ 3.55
SENP3-EIF4A1A0A087X0R7 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC37.19■■■■□ 3.54
SENP3-EIF4A1A0A087X0R7 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
SENP3-EIF4A1A0A087X0R7 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC37.15■■■■□ 3.54
SENP3-EIF4A1A0A087X0R7 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC37.15■■■■□ 3.54
SENP3-EIF4A1A0A087X0R7 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
SENP3-EIF4A1A0A087X0R7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC37.12■■■■□ 3.53
SENP3-EIF4A1A0A087X0R7 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC37.09■■■■□ 3.53
SENP3-EIF4A1A0A087X0R7 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC37.08■■■■□ 3.53
SENP3-EIF4A1A0A087X0R7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC37.07■■■■□ 3.53
SENP3-EIF4A1A0A087X0R7 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
SENP3-EIF4A1A0A087X0R7 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC37.01■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC37■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC37■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC36.98■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC36.97■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC36.96■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
SENP3-EIF4A1A0A087X0R7 MVK-208ENST00000539696 608 ntTSL 5 BASIC36.94■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC36.94■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 ST7-205ENST00000393446 2114 ntTSL 5 BASIC36.92■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC36.89■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC36.89■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
SENP3-EIF4A1A0A087X0R7 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC36.87■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC36.83■■■■□ 3.49
SENP3-EIF4A1A0A087X0R7 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC36.81■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC36.81■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC36.81■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC36.79■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC36.78■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC36.78■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC36.77■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC36.77■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC36.76■■■■□ 3.48
SENP3-EIF4A1A0A087X0R7 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC36.74■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC36.74■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 RARRES2P7-201ENST00000567349 469 ntBASIC36.73■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC36.73■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC36.71■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC36.7■■■■□ 3.47
SENP3-EIF4A1A0A087X0R7 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC36.69■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC36.67■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 ST7-202ENST00000323984 2142 ntTSL 5 BASIC36.67■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 ST7-207ENST00000393449 2127 ntTSL 5 BASIC36.67■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC36.65■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC36.64■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 AC097358.2-201ENST00000607541 1159 ntBASIC36.64■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC36.64■■■■□ 3.46
SENP3-EIF4A1A0A087X0R7 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC36.61■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC36.61■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC36.6■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC36.58■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC36.58■■■■□ 3.45
SENP3-EIF4A1A0A087X0R7 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC36.57■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 AC120057.4-201ENST00000624722 1615 ntBASIC36.56■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC36.55■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC36.54■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC36.52■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 SUZ12P1-203ENST00000578195 985 ntBASIC36.52■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
SENP3-EIF4A1A0A087X0R7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms