Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TMUB2-203ENST00000446571 1580 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RUBCN-202ENST00000296343 2919 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 FAIM2-201ENST00000320634 4654 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 GRIA1-209ENST00000518783 5233 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ZNF37A-206ENST00000638053 4448 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 RNF10-203ENST00000413266 2671 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC004471.2-201ENST00000609936 1514 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 RASGRP4-207ENST00000587738 2293 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CDH5-208ENST00000614547 3779 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 BTD-201ENST00000303498 2075 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 VAV1-202ENST00000539284 2627 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 COL5A2-203ENST00000618828 6399 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 XRRA1-201ENST00000321448 4695 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 DLEU1-231ENST00000490577 2440 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ANXA4-201ENST00000394295 2799 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ZBTB20-212ENST00000474710 2757 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TACC1-211ENST00000520973 2564 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 NEK6-213ENST00000540326 2578 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 RALBP1-202ENST00000383432 4224 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TRPC3-205ENST00000513531 2382 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ARSEP1-201ENST00000420443 635 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TLE1P1-201ENST00000422965 589 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC096582.2-201ENST00000510860 516 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AP000894.1-201ENST00000584430 520 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC026471.5-201ENST00000615068 467 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TBC1D8-201ENST00000376840 3627 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SLC2A4-201ENST00000317370 3426 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 FGFR1-208ENST00000397108 2870 ntAPPRIS ALT1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 DCLK1-201ENST00000255448 5703 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 MPPE1-202ENST00000317235 2324 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 FXR1-220ENST00000491062 1768 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC009078.3-201ENST00000624205 4084 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 KIF22-202ENST00000400751 2493 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ZNF23-201ENST00000357254 3186 ntAPPRIS P3 TSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CADM1-212ENST00000542447 4223 ntAPPRIS ALT1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 GPR132-201ENST00000329797 3660 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CICP9-201ENST00000444451 1913 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 HDAC5-204ENST00000586802 3662 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CCDC18-201ENST00000343253 4867 ntAPPRIS P2 TSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 BAG5-203ENST00000445922 4867 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 C9orf64-201ENST00000314700 2067 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TBC1D3B-202ENST00000611257 2081 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AL513497.1-201ENST00000624273 2083 ntBASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SCN5A-207ENST00000449557 5898 ntTSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ITGBL1-205ENST00000545560 4808 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 CD163L1-201ENST00000313599 4615 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 ITGB8-205ENST00000537992 3420 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 RIPOR3-201ENST00000045083 4279 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 SNRK-202ENST00000429705 5128 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 AC020928.1-201ENST00000590750 1850 ntTSL 2 BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TECPR2-201ENST00000359520 8686 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
LINC00643Q86TS7 TMEM107-208ENST00000532998 2358 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 E2F8-205ENST00000620009 3519 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CYP1A1-201ENST00000379727 2685 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PIK3R5-218ENST00000611902 4339 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CANT1-216ENST00000620915 3337 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 LINC01070-201ENST00000561786 2829 ntTSL 2 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 ADAMTS20-204ENST00000553158 4633 ntTSL 5 BASIC8.59□□□□□ -1.03
LINC00643Q86TS7 PPP3CB-203ENST00000394828 3119 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms