Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
RFC3P40938 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.92□□□□□ -0.34
RFC3P40938 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 RN7SKP109-201ENST00000410592 316 ntBASIC12.92□□□□□ -0.34
RFC3P40938 HIST2H2BA-201ENST00000412169 381 ntBASIC12.92□□□□□ -0.34
RFC3P40938 PFN2-202ENST00000423691 911 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.92□□□□□ -0.34
RFC3P40938 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.92□□□□□ -0.34
RFC3P40938 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 AP001065.2-201ENST00000617205 644 ntBASIC12.92□□□□□ -0.34
RFC3P40938 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 AP001184.1-201ENST00000637936 376 ntBASIC12.92□□□□□ -0.34
RFC3P40938 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 AC090505.1-201ENST00000430515 1834 ntBASIC12.91□□□□□ -0.34
RFC3P40938 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 SAT1-201ENST00000379251 801 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 SAT1-202ENST00000379253 909 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 SAT1-203ENST00000379254 868 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 HLA-DMA-203ENST00000395305 777 ntBASIC12.91□□□□□ -0.34
RFC3P40938 ERP29P1-201ENST00000442902 706 ntBASIC12.91□□□□□ -0.34
RFC3P40938 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 CR383656.3-201ENST00000551315 183 ntBASIC12.91□□□□□ -0.34
RFC3P40938 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC12.91□□□□□ -0.34
RFC3P40938 SIGLEC22P-201ENST00000599104 714 ntBASIC12.91□□□□□ -0.34
RFC3P40938 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.91□□□□□ -0.34
RFC3P40938 AL133467.4-201ENST00000602953 725 ntBASIC12.91□□□□□ -0.34
RFC3P40938 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 AL161773.1-201ENST00000624845 863 ntBASIC12.91□□□□□ -0.34
RFC3P40938 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
RFC3P40938 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.91□□□□□ -0.34
RFC3P40938 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.91□□□□□ -0.34
RFC3P40938 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RFC3P40938 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms