RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 DCAF8L2P0C7V8 631 aa25.64■■□□□ 1.7
SIX4-201ENST00000216513 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
SIX4-201ENST00000216513 SUPT5HO00267 1087 aaKnown RBP23.23■■□□□ 1.31
SIX4-201ENST00000216513 SHROOM4Q9ULL8 1493 aa23.23■■□□□ 1.31
SIX4-201ENST00000216513 EHMT2Q96KQ7 1210 aa22.9■■□□□ 1.26
SIX4-201ENST00000216513 FAM9AQ8IZU1 332 aaPredicted RBP22.34■■□□□ 1.17
SIX4-201ENST00000216513 RANGAP1P46060 587 aaPredicted RBP22.08■■□□□ 1.13
SIX4-201ENST00000216513 APLP2Q06481 763 aa22.02■■□□□ 1.12
SIX4-201ENST00000216513 TTBK1Q5TCY1 1321 aaPredicted RBP21.98■■□□□ 1.11
SIX4-201ENST00000216513 ATP1B4Q9UN42 357 aaPredicted RBP21.93■■□□□ 1.1
SIX4-201ENST00000216513 ABCC9O60706 1549 aa21.85■■□□□ 1.09
SIX4-201ENST00000216513 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
SIX4-201ENST00000216513 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
SIX4-201ENST00000216513 MYT1LQ9UL68 1186 aa21.48■■□□□ 1.03
SIX4-201ENST00000216513 UBTFP17480 764 aaKnown RBP21.41■■□□□ 1.02
SIX4-201ENST00000216513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.37■■□□□ 1.01
SIX4-201ENST00000216513 HNRNPUL2Q1KMD3 747 aaKnown RBP21.37■■□□□ 1.01
SIX4-201ENST00000216513 PCGF6Q9BYE7 350 aa21.25■□□□□ 0.99
SIX4-201ENST00000216513 CHIC1Q5VXU3 224 aa21.11■□□□□ 0.97
SIX4-201ENST00000216513 PPARGC1BQ86YN6 1023 aaKnown RBP21.11■□□□□ 0.97
SIX4-201ENST00000216513 FBLN2P98095 1184 aa21.06■□□□□ 0.96
SIX4-201ENST00000216513 ITGAEP38570 1179 aa20.73■□□□□ 0.91
SIX4-201ENST00000216513 YTHDC1Q96MU7 727 aaKnown RBP20.72■□□□□ 0.91
SIX4-201ENST00000216513 PELP1Q8IZL8 1130 aaKnown RBP20.67■□□□□ 0.9
SIX4-201ENST00000216513 CCER1Q8TC90 406 aaPredicted RBP20.64■□□□□ 0.89
SIX4-201ENST00000216513 CNGB1Q14028 1251 aaPredicted RBP20.46■□□□□ 0.87
SIX4-201ENST00000216513 POLR3GLQ9BT43 218 aa20.45■□□□□ 0.86
SIX4-201ENST00000216513 PLPPR3Q6T4P5 718 aa20.45■□□□□ 0.86
SIX4-201ENST00000216513 ARID3CA6NKF2 412 aa20.43■□□□□ 0.86
SIX4-201ENST00000216513 SLC4A1APQ9BWU0 796 aaKnown RBP20.41■□□□□ 0.86
SIX4-201ENST00000216513 SCRIBQ14160 1630 aa20.38■□□□□ 0.85
SIX4-201ENST00000216513 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
SIX4-201ENST00000216513 BCANQ96GW7 911 aa20.29■□□□□ 0.84
SIX4-201ENST00000216513 NPM1P06748 294 aaKnown RBP eCLIP20.27■□□□□ 0.84
SIX4-201ENST00000216513 P3H3Q8IVL6 736 aa20.24■□□□□ 0.83
SIX4-201ENST00000216513 FAM50AQ14320 339 aaKnown RBP20.23■□□□□ 0.83
SIX4-201ENST00000216513 ERICH6Q7L0X2 663 aa20.19■□□□□ 0.82
SIX4-201ENST00000216513 ESF1Q9H501 851 aaKnown RBP20.19■□□□□ 0.82
SIX4-201ENST00000216513 TRIM52Q96A61 297 aa20.13■□□□□ 0.81
SIX4-201ENST00000216513 CENPBP07199 599 aaPredicted RBP20.08■□□□□ 0.8
SIX4-201ENST00000216513 ZNF777Q9ULD5 760 aaPredicted RBP20.07■□□□□ 0.8
SIX4-201ENST00000216513 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
SIX4-201ENST00000216513 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
SIX4-201ENST00000216513 ERCC6Q03468 1493 aa19.94■□□□□ 0.78
SIX4-201ENST00000216513 ZNF326Q5BKZ1 582 aaKnown RBP19.89■□□□□ 0.78
SIX4-201ENST00000216513 STAG3Q9UJ98 1225 aa19.89■□□□□ 0.77
SIX4-201ENST00000216513 TRHP20396 242 aaPredicted RBP19.88■□□□□ 0.77
SIX4-201ENST00000216513 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
SIX4-201ENST00000216513 ZEB1P37275 1124 aaPredicted RBP19.84■□□□□ 0.77
SIX4-201ENST00000216513 CDK11AQ9UQ88 783 aaPredicted RBP19.83■□□□□ 0.76
SIX4-201ENST00000216513 MYT1Q01538 1121 aa19.82■□□□□ 0.76
SIX4-201ENST00000216513 CHGAP10645 457 aaKnown RBP19.79■□□□□ 0.76
SIX4-201ENST00000216513 NEFLP07196 543 aa19.79■□□□□ 0.76
SIX4-201ENST00000216513 SLC24A1O60721 1099 aa19.77■□□□□ 0.76
SIX4-201ENST00000216513 TRIM26Q12899 539 aaPredicted RBP19.76■□□□□ 0.75
SIX4-201ENST00000216513 HRCP23327 699 aa19.75■□□□□ 0.75
SIX4-201ENST00000216513 NEUROD1Q13562 356 aa19.73■□□□□ 0.75
SIX4-201ENST00000216513 KCNH8Q96L42 1107 aa19.69■□□□□ 0.74
SIX4-201ENST00000216513 ARID4BQ4LE39 1312 aaPredicted RBP19.68■□□□□ 0.74
SIX4-201ENST00000216513 ZCCHC6Q5VYS8 1495 aaKnown RBP19.66■□□□□ 0.74
SIX4-201ENST00000216513 CSRNP3Q8WYN3 585 aa19.65■□□□□ 0.74
SIX4-201ENST00000216513 NACADO15069 1562 aa19.59■□□□□ 0.73
SIX4-201ENST00000216513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.58■□□□□ 0.73
SIX4-201ENST00000216513 SENP3Q9H4L4 574 aaPredicted RBP19.58■□□□□ 0.73
SIX4-201ENST00000216513 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.72
SIX4-201ENST00000216513 BAZ1BQ9UIG0 1483 aaKnown RBP19.52■□□□□ 0.72
SIX4-201ENST00000216513 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
SIX4-201ENST00000216513 BCL11AQ9H165 835 aa19.49■□□□□ 0.71
SIX4-201ENST00000216513 C14orf37Q86TY3 774 aa19.43■□□□□ 0.7
SIX4-201ENST00000216513 A0A0G2JS52 829 aa19.42■□□□□ 0.7
SIX4-201ENST00000216513 CHIC2Q9UKJ5 165 aa19.39■□□□□ 0.69
SIX4-201ENST00000216513 TSPY4P0CV99 314 aa19.34■□□□□ 0.69
SIX4-201ENST00000216513 TSPY10P0CW01 314 aa19.34■□□□□ 0.69
SIX4-201ENST00000216513 PPP1R15AO75807 674 aaPredicted RBP19.33■□□□□ 0.68
SIX4-201ENST00000216513 NEFMP07197 916 aa19.32■□□□□ 0.68
SIX4-201ENST00000216513 DIEXFQ68CQ4 756 aaKnown RBP19.32■□□□□ 0.68
SIX4-201ENST00000216513 PLEKHD1A6NEE1 506 aa19.31■□□□□ 0.68
SIX4-201ENST00000216513 ZBTB7CA1YPR0 619 aa19.29■□□□□ 0.68
SIX4-201ENST00000216513 DAXXQ9UER7 740 aaPredicted RBP19.27■□□□□ 0.67
SIX4-201ENST00000216513 MLECQ14165 292 aa19.25■□□□□ 0.67
SIX4-201ENST00000216513 HAP1P54257 671 aaPredicted RBP19.23■□□□□ 0.67
SIX4-201ENST00000216513 CECR2Q9BXF3 1484 aa19.21■□□□□ 0.67
SIX4-201ENST00000216513 MTUS2Q5JR59 1369 aa19.2■□□□□ 0.66
SIX4-201ENST00000216513 AEBP2Q6ZN18 517 aaPredicted RBP19.16■□□□□ 0.66
SIX4-201ENST00000216513 CLSPNQ9HAW4 1339 aa19.15■□□□□ 0.66
SIX4-201ENST00000216513 KDM2AQ9Y2K7 1162 aa19.11■□□□□ 0.65
SIX4-201ENST00000216513 ZBTB47Q9UFB7 747 aaPredicted RBP19.08■□□□□ 0.65
SIX4-201ENST00000216513 PDS5BQ9NTI5 1447 aa19.08■□□□□ 0.64
SIX4-201ENST00000216513 EIF4G1Q04637 1599 aaKnown RBP19.07■□□□□ 0.64
SIX4-201ENST00000216513 GTF3C3Q9Y5Q9 886 aa19.07■□□□□ 0.64
SIX4-201ENST00000216513 RSF1Q96T23 1441 aaPredicted RBP19.03■□□□□ 0.64
SIX4-201ENST00000216513 LMOD2Q6P5Q4 547 aa19.02■□□□□ 0.64
SIX4-201ENST00000216513 CANXP27824 592 aaKnown RBP19.02■□□□□ 0.63
SIX4-201ENST00000216513 CFDP1Q9UEE9 299 aaPredicted RBP19.01■□□□□ 0.63
SIX4-201ENST00000216513 WRNQ14191 1432 aaPredicted RBP eCLIP19■□□□□ 0.63
SIX4-201ENST00000216513 RRP7BPQ9NSQ0 103 aa19■□□□□ 0.63
SIX4-201ENST00000216513 CYB5RLQ6IPT4 315 aa18.99■□□□□ 0.63
SIX4-201ENST00000216513 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
SIX4-201ENST00000216513 KIF27Q86VH2 1401 aa18.98■□□□□ 0.63
SIX4-201ENST00000216513 ANP32CO43423 234 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms