RNA–Protein interactions for RNA: ENST00000577830.5

CUEDC1-206, Transcript of CUE domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUEDC1, Length 3,621 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1-206ENST00000577830 NISCHQ9Y2I1 1504 aa29.34■■■□□ 2.29
CUEDC1-206ENST00000577830 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
CUEDC1-206ENST00000577830 SUPT5HO00267 1087 aaKnown RBP25.64■■□□□ 1.7
CUEDC1-206ENST00000577830 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
CUEDC1-206ENST00000577830 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
CUEDC1-206ENST00000577830 ZCCHC6Q5VYS8 1495 aaKnown RBP24.67■■□□□ 1.54
CUEDC1-206ENST00000577830 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
CUEDC1-206ENST00000577830 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
CUEDC1-206ENST00000577830 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
CUEDC1-206ENST00000577830 LOC105371045A0A1W2PR82 267 aa24.21■■□□□ 1.47
CUEDC1-206ENST00000577830 HRCP23327 699 aa24.2■■□□□ 1.46
CUEDC1-206ENST00000577830 PPARGC1BQ86YN6 1023 aaKnown RBP24.18■■□□□ 1.46
CUEDC1-206ENST00000577830 EHMT2Q96KQ7 1210 aa24.1■■□□□ 1.45
CUEDC1-206ENST00000577830 ABCC9O60706 1549 aa23.98■■□□□ 1.43
CUEDC1-206ENST00000577830 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
CUEDC1-206ENST00000577830 DCAF1Q9Y4B6 1507 aa23.76■■□□□ 1.39
CUEDC1-206ENST00000577830 SCRIBQ14160 1630 aa23.67■■□□□ 1.38
CUEDC1-206ENST00000577830 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
CUEDC1-206ENST00000577830 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
CUEDC1-206ENST00000577830 TTBK1Q5TCY1 1321 aaPredicted RBP23.3■■□□□ 1.32
CUEDC1-206ENST00000577830 RSF1Q96T23 1441 aaPredicted RBP23.21■■□□□ 1.31
CUEDC1-206ENST00000577830 NACADO15069 1562 aa23.18■■□□□ 1.3
CUEDC1-206ENST00000577830 CECR2Q9BXF3 1484 aa23.14■■□□□ 1.29
CUEDC1-206ENST00000577830 PABPN1Q86U42 306 aaKnown RBP eCLIP23.09■■□□□ 1.29
CUEDC1-206ENST00000577830 ZEB1P37275 1124 aaPredicted RBP22.96■■□□□ 1.27
CUEDC1-206ENST00000577830 RB1CC1Q8TDY2 1594 aa22.96■■□□□ 1.27
CUEDC1-206ENST00000577830 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.95■■□□□ 1.26
CUEDC1-206ENST00000577830 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
CUEDC1-206ENST00000577830 CCER1Q8TC90 406 aaPredicted RBP22.88■■□□□ 1.25
CUEDC1-206ENST00000577830 WIZO95785 1651 aa22.73■■□□□ 1.23
CUEDC1-206ENST00000577830 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.21
CUEDC1-206ENST00000577830 RANGAP1P46060 587 aaPredicted RBP22.62■■□□□ 1.21
CUEDC1-206ENST00000577830 UBTFP17480 764 aaKnown RBP22.6■■□□□ 1.21
CUEDC1-206ENST00000577830 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
CUEDC1-206ENST00000577830 UNC13AQ9UPW8 1703 aa22.44■■□□□ 1.18
CUEDC1-206ENST00000577830 YTHDC1Q96MU7 727 aaKnown RBP22.42■■□□□ 1.18
CUEDC1-206ENST00000577830 DIEXFQ68CQ4 756 aaKnown RBP22.41■■□□□ 1.18
CUEDC1-206ENST00000577830 HNRNPUL2Q1KMD3 747 aaKnown RBP22.37■■□□□ 1.17
CUEDC1-206ENST00000577830 SMARCA4P51532 1647 aa22.37■■□□□ 1.17
CUEDC1-206ENST00000577830 NEUROD1Q13562 356 aa22.36■■□□□ 1.17
CUEDC1-206ENST00000577830 CCDC88BA6NC98 1476 aa22.33■■□□□ 1.16
CUEDC1-206ENST00000577830 BICRAQ9NZM4 1560 aa22.32■■□□□ 1.16
CUEDC1-206ENST00000577830 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
CUEDC1-206ENST00000577830 GTF3C3Q9Y5Q9 886 aa22.26■■□□□ 1.15
CUEDC1-206ENST00000577830 ACIN1Q9UKV3 1341 aaKnown RBP22.25■■□□□ 1.15
CUEDC1-206ENST00000577830 TOP2AP11388 1531 aaKnown RBP22.24■■□□□ 1.15
CUEDC1-206ENST00000577830 SOGA1O94964 1423 aa22.23■■□□□ 1.15
CUEDC1-206ENST00000577830 CSRNP3Q8WYN3 585 aa22.21■■□□□ 1.15
CUEDC1-206ENST00000577830 CENPBP07199 599 aaPredicted RBP22.21■■□□□ 1.15
CUEDC1-206ENST00000577830 CEP162Q5TB80 1403 aa22.16■■□□□ 1.14
CUEDC1-206ENST00000577830 PELP1Q8IZL8 1130 aaKnown RBP22.14■■□□□ 1.14
CUEDC1-206ENST00000577830 SMARCA2P51531 1590 aa22.14■■□□□ 1.13
CUEDC1-206ENST00000577830 APLP2Q06481 763 aa22.13■■□□□ 1.13
CUEDC1-206ENST00000577830 RUSC2Q8N2Y8 1516 aa22.09■■□□□ 1.13
CUEDC1-206ENST00000577830 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.11
CUEDC1-206ENST00000577830 ZNF316A6NFI3 1004 aaPredicted RBP22.01■■□□□ 1.11
CUEDC1-206ENST00000577830 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
CUEDC1-206ENST00000577830 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
CUEDC1-206ENST00000577830 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
CUEDC1-206ENST00000577830 MIER1Q8N108 512 aa21.91■■□□□ 1.1
CUEDC1-206ENST00000577830 ITGAEP38570 1179 aa21.88■■□□□ 1.09
CUEDC1-206ENST00000577830 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
CUEDC1-206ENST00000577830 GOLGA3Q08378 1498 aa21.77■■□□□ 1.08
CUEDC1-206ENST00000577830 CLIP1P30622 1438 aa21.75■■□□□ 1.07
CUEDC1-206ENST00000577830 PEG3Q9GZU2 1588 aa21.74■■□□□ 1.07
CUEDC1-206ENST00000577830 SYNJ1O43426 1573 aa21.66■■□□□ 1.06
CUEDC1-206ENST00000577830 EEA1Q15075 1411 aa21.65■■□□□ 1.06
CUEDC1-206ENST00000577830 ATP1B4Q9UN42 357 aaPredicted RBP21.63■■□□□ 1.05
CUEDC1-206ENST00000577830 CEP164Q9UPV0 1460 aa21.57■■□□□ 1.04
CUEDC1-206ENST00000577830 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
CUEDC1-206ENST00000577830 NCAPD3P42695 1498 aa21.55■■□□□ 1.04
CUEDC1-206ENST00000577830 KANK4Q5T7N3 995 aaPredicted RBP21.54■■□□□ 1.04
CUEDC1-206ENST00000577830 VPS8Q8N3P4 1428 aa21.48■■□□□ 1.03
CUEDC1-206ENST00000577830 P3H3Q8IVL6 736 aa21.43■■□□□ 1.02
CUEDC1-206ENST00000577830 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
CUEDC1-206ENST00000577830 FAM50AQ14320 339 aaKnown RBP21.35■■□□□ 1.01
CUEDC1-206ENST00000577830 BCANQ96GW7 911 aa21.35■■□□□ 1.01
CUEDC1-206ENST00000577830 DNAJC5BQ9UF47 199 aa21.35■■□□□ 1.01
CUEDC1-206ENST00000577830 HIRIP3Q9BW71 556 aaPredicted RBP21.33■■□□□ 1.01
CUEDC1-206ENST00000577830 CUX1P39880 1505 aa21.31■■□□□ 1
CUEDC1-206ENST00000577830 CFTRP13569 1480 aa21.31■■□□□ 1
CUEDC1-206ENST00000577830 CC2D2AQ9P2K1 1620 aa21.29■■□□□ 1
CUEDC1-206ENST00000577830 CADPSQ9ULU8 1353 aa21.29■■□□□ 1
CUEDC1-206ENST00000577830 TOP2BQ02880 1626 aa21.29■■□□□ 1
CUEDC1-206ENST00000577830 KCNH8Q96L42 1107 aa21.28■■□□□ 1
CUEDC1-206ENST00000577830 KIF21BO75037 1637 aa21.28■■□□□ 1
CUEDC1-206ENST00000577830 MYT1Q01538 1121 aa21.27■■□□□ 1
CUEDC1-206ENST00000577830 DHX57Q6P158 1386 aaKnown RBP21.26■□□□□ 0.99
CUEDC1-206ENST00000577830 KIF27Q86VH2 1401 aa21.23■□□□□ 0.99
CUEDC1-206ENST00000577830 DDX10Q13206 875 aaKnown RBP21.21■□□□□ 0.99
CUEDC1-206ENST00000577830 SIN3AQ96ST3 1273 aa21.2■□□□□ 0.98
CUEDC1-206ENST00000577830 CUX2O14529 1486 aa21.19■□□□□ 0.98
CUEDC1-206ENST00000577830 NESP48681 1621 aa21.18■□□□□ 0.98
CUEDC1-206ENST00000577830 PRKCSHP14314 528 aaPredicted RBP21.17■□□□□ 0.98
CUEDC1-206ENST00000577830 SUPT16HQ9Y5B9 1047 aaKnown RBP21.17■□□□□ 0.98
CUEDC1-206ENST00000577830 ARAP1Q96P48 1450 aa21.12■□□□□ 0.97
CUEDC1-206ENST00000577830 SLC24A1O60721 1099 aa21.11■□□□□ 0.97
CUEDC1-206ENST00000577830 CCNB3Q8WWL7 1395 aa21.11■□□□□ 0.97
CUEDC1-206ENST00000577830 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
CUEDC1-206ENST00000577830 FANCD2Q9BXW9 1451 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms