RNA–Protein interactions for RNA: ENST00000395305.7

HLA-DMA-203, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

BASIC

Gene HLA-DMA, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-203ENST00000395305 NISCHQ9Y2I1 1504 aa34.21■■■■□ 3.07
HLA-DMA-203ENST00000395305 CCDC180Q9P1Z9 1646 aa30.44■■■□□ 2.46
HLA-DMA-203ENST00000395305 ABCC9O60706 1549 aa30.02■■■□□ 2.4
HLA-DMA-203ENST00000395305 RB1CC1Q8TDY2 1594 aa28.79■■■□□ 2.2
HLA-DMA-203ENST00000395305 DCAF8L2P0C7V8 631 aa28.75■■■□□ 2.19
HLA-DMA-203ENST00000395305 NACADO15069 1562 aa28.73■■■□□ 2.19
HLA-DMA-203ENST00000395305 MYO15BQ96JP2 1530 aa28.5■■■□□ 2.15
HLA-DMA-203ENST00000395305 ZCCHC6Q5VYS8 1495 aaKnown RBP28.41■■■□□ 2.14
HLA-DMA-203ENST00000395305 DCAF1Q9Y4B6 1507 aa28.3■■■□□ 2.12
HLA-DMA-203ENST00000395305 UNC13AQ9UPW8 1703 aa28.09■■■□□ 2.09
HLA-DMA-203ENST00000395305 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
HLA-DMA-203ENST00000395305 BICRAQ9NZM4 1560 aa27.92■■■□□ 2.06
HLA-DMA-203ENST00000395305 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
HLA-DMA-203ENST00000395305 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
HLA-DMA-203ENST00000395305 SHROOM4Q9ULL8 1493 aa27.62■■■□□ 2.01
HLA-DMA-203ENST00000395305 EIF4G1Q04637 1599 aaKnown RBP27.19■■□□□ 1.94
HLA-DMA-203ENST00000395305 CC2D2AQ9P2K1 1620 aa27.14■■□□□ 1.94
HLA-DMA-203ENST00000395305 CECR2Q9BXF3 1484 aa27.01■■□□□ 1.91
HLA-DMA-203ENST00000395305 NCAPD3P42695 1498 aa26.55■■□□□ 1.84
HLA-DMA-203ENST00000395305 SMARCA4P51532 1647 aa26.54■■□□□ 1.84
HLA-DMA-203ENST00000395305 BAZ1AQ9NRL2 1556 aaPredicted RBP26.51■■□□□ 1.83
HLA-DMA-203ENST00000395305 ATAD2BQ9ULI0 1458 aa26.5■■□□□ 1.83
HLA-DMA-203ENST00000395305 SMARCA2P51531 1590 aa26.44■■□□□ 1.82
HLA-DMA-203ENST00000395305 MROH2BQ7Z745 1585 aa26.34■■□□□ 1.81
HLA-DMA-203ENST00000395305 HMGXB3Q12766 1538 aa26.33■■□□□ 1.81
HLA-DMA-203ENST00000395305 PEG3Q9GZU2 1588 aa26.31■■□□□ 1.8
HLA-DMA-203ENST00000395305 BAZ1BQ9UIG0 1483 aaKnown RBP26.24■■□□□ 1.79
HLA-DMA-203ENST00000395305 WIZO95785 1651 aa26.04■■□□□ 1.76
HLA-DMA-203ENST00000395305 RSF1Q96T23 1441 aaPredicted RBP26■■□□□ 1.75
HLA-DMA-203ENST00000395305 NESP48681 1621 aa25.92■■□□□ 1.74
HLA-DMA-203ENST00000395305 ERCC6Q03468 1493 aa25.89■■□□□ 1.73
HLA-DMA-203ENST00000395305 LAMC3Q9Y6N6 1575 aa25.83■■□□□ 1.73
HLA-DMA-203ENST00000395305 CADPSQ9ULU8 1353 aa25.77■■□□□ 1.72
HLA-DMA-203ENST00000395305 TOP2AP11388 1531 aaKnown RBP25.74■■□□□ 1.71
HLA-DMA-203ENST00000395305 PDS5BQ9NTI5 1447 aa25.71■■□□□ 1.71
HLA-DMA-203ENST00000395305 CUX2O14529 1486 aa25.71■■□□□ 1.71
HLA-DMA-203ENST00000395305 KIF21AQ7Z4S6 1674 aa25.56■■□□□ 1.68
HLA-DMA-203ENST00000395305 CFTRP13569 1480 aa25.54■■□□□ 1.68
HLA-DMA-203ENST00000395305 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
HLA-DMA-203ENST00000395305 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
HLA-DMA-203ENST00000395305 FANCD2Q9BXW9 1451 aa25.43■■□□□ 1.66
HLA-DMA-203ENST00000395305 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
HLA-DMA-203ENST00000395305 CEP164Q9UPV0 1460 aa25.4■■□□□ 1.66
HLA-DMA-203ENST00000395305 WDR62O43379 1518 aa25.31■■□□□ 1.64
HLA-DMA-203ENST00000395305 DNAJC5Q9H3Z4 198 aa25.25■■□□□ 1.63
HLA-DMA-203ENST00000395305 PRDM2Q13029 1718 aa25.25■■□□□ 1.63
HLA-DMA-203ENST00000395305 SUPT5HO00267 1087 aaKnown RBP25.23■■□□□ 1.63
HLA-DMA-203ENST00000395305 URB2Q14146 1524 aaKnown RBP25.17■■□□□ 1.62
HLA-DMA-203ENST00000395305 ABCC8Q09428 1581 aa25.03■■□□□ 1.6
HLA-DMA-203ENST00000395305 TOPBP1Q92547 1522 aa24.99■■□□□ 1.59
HLA-DMA-203ENST00000395305 DNMBPQ6XZF7 1577 aa24.93■■□□□ 1.58
HLA-DMA-203ENST00000395305 IFT140Q96RY7 1462 aa24.89■■□□□ 1.58
HLA-DMA-203ENST00000395305 ZNF608Q9ULD9 1512 aaPredicted RBP24.79■■□□□ 1.56
HLA-DMA-203ENST00000395305 POLA1P09884 1462 aaPredicted RBP24.76■■□□□ 1.55
HLA-DMA-203ENST00000395305 TARBP1Q13395 1621 aaKnown RBP24.72■■□□□ 1.55
HLA-DMA-203ENST00000395305 CUX1P39880 1505 aa24.72■■□□□ 1.55
HLA-DMA-203ENST00000395305 SOGA1O94964 1423 aa24.72■■□□□ 1.55
HLA-DMA-203ENST00000395305 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
HLA-DMA-203ENST00000395305 RAD54L2Q9Y4B4 1467 aa24.67■■□□□ 1.54
HLA-DMA-203ENST00000395305 FGD5Q6ZNL6 1462 aa24.66■■□□□ 1.54
HLA-DMA-203ENST00000395305 AQRO60306 1485 aaKnown RBP eCLIP24.65■■□□□ 1.54
HLA-DMA-203ENST00000395305 EIF4G3O43432 1585 aaKnown RBP24.63■■□□□ 1.53
HLA-DMA-203ENST00000395305 TDRD9Q8NDG6 1382 aaKnown RBP24.59■■□□□ 1.53
HLA-DMA-203ENST00000395305 WDR97A6NE52 1622 aa24.52■■□□□ 1.52
HLA-DMA-203ENST00000395305 WRNQ14191 1432 aaPredicted RBP eCLIP24.51■■□□□ 1.51
HLA-DMA-203ENST00000395305 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
HLA-DMA-203ENST00000395305 FBLN2P98095 1184 aa24.44■■□□□ 1.5
HLA-DMA-203ENST00000395305 ABCA10Q8WWZ4 1543 aa24.44■■□□□ 1.5
HLA-DMA-203ENST00000395305 BIVM-ERCC5R4GMW8 1640 aa24.43■■□□□ 1.5
HLA-DMA-203ENST00000395305 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
HLA-DMA-203ENST00000395305 SYNJ1O43426 1573 aa24.41■■□□□ 1.5
HLA-DMA-203ENST00000395305 GAPVD1Q14C86 1478 aa24.39■■□□□ 1.5
HLA-DMA-203ENST00000395305 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
HLA-DMA-203ENST00000395305 CHD1O14646 1710 aa24.36■■□□□ 1.49
HLA-DMA-203ENST00000395305 MAGI1Q96QZ7 1491 aaPredicted RBP24.36■■□□□ 1.49
HLA-DMA-203ENST00000395305 CHMP7Q8WUX9 453 aaPredicted RBP24.35■■□□□ 1.49
HLA-DMA-203ENST00000395305 ABCA5Q8WWZ7 1642 aa24.31■■□□□ 1.48
HLA-DMA-203ENST00000395305 TRIM41Q8WV44 630 aa24.28■■□□□ 1.48
HLA-DMA-203ENST00000395305 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
HLA-DMA-203ENST00000395305 SYNJ2O15056 1496 aa24.27■■□□□ 1.48
HLA-DMA-203ENST00000395305 RIMBP3CA6NJZ7 1639 aa24.2■■□□□ 1.46
HLA-DMA-203ENST00000395305 RIMBP3BA6NNM3 1639 aa24.2■■□□□ 1.46
HLA-DMA-203ENST00000395305 RIMBP3Q9UFD9 1639 aa24.2■■□□□ 1.46
HLA-DMA-203ENST00000395305 ARHGEF11O15085 1522 aa24.19■■□□□ 1.46
HLA-DMA-203ENST00000395305 ERICH3Q5RHP9 1530 aa24.14■■□□□ 1.45
HLA-DMA-203ENST00000395305 CLASP1Q7Z460 1538 aa24.12■■□□□ 1.45
HLA-DMA-203ENST00000395305 FHAD1B1AJZ9 1412 aa24.11■■□□□ 1.45
HLA-DMA-203ENST00000395305 GRIN2AQ12879 1464 aa24.08■■□□□ 1.45
HLA-DMA-203ENST00000395305 ADAMTS12P58397 1594 aa24.08■■□□□ 1.44
HLA-DMA-203ENST00000395305 CYB5RLQ6IPT4 315 aa24.07■■□□□ 1.44
HLA-DMA-203ENST00000395305 KIF27Q86VH2 1401 aa24.03■■□□□ 1.44
HLA-DMA-203ENST00000395305 IGF1RP08069 1367 aa24.01■■□□□ 1.43
HLA-DMA-203ENST00000395305 NUP160Q12769 1436 aa24■■□□□ 1.43
HLA-DMA-203ENST00000395305 ARAP1Q96P48 1450 aa23.97■■□□□ 1.43
HLA-DMA-203ENST00000395305 CEP170Q5SW79 1584 aa23.94■■□□□ 1.42
HLA-DMA-203ENST00000395305 CUL7Q14999 1698 aa23.85■■□□□ 1.41
HLA-DMA-203ENST00000395305 CARMIL1Q5VZK9 1371 aa23.84■■□□□ 1.41
HLA-DMA-203ENST00000395305 JPH4Q96JJ6 628 aa23.84■■□□□ 1.41
HLA-DMA-203ENST00000395305 SHROOM2Q13796 1616 aa23.81■■□□□ 1.4
HLA-DMA-203ENST00000395305 ERCC6L2Q5T890 1561 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms