Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 HIST2H2BC-201ENST00000498492 580 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 COQ10BP2-201ENST00000513804 724 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB1P09429 AC132825.4-202ENST00000578792 434 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.53■□□□□ 0.24
HMGB1P09429 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB1P09429 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 AL355102.3-201ENST00000554299 1678 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HMGB1P09429 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 TP73-207ENST00000378290 1831 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 TCAF1P1-201ENST00000414990 2232 ntBASIC16.52■□□□□ 0.24
HMGB1P09429 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGB1P09429 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 AC026320.2-201ENST00000434379 478 ntBASIC16.52■□□□□ 0.24
HMGB1P09429 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 AC073150.1-201ENST00000450406 1084 ntBASIC16.52■□□□□ 0.24
HMGB1P09429 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.52■□□□□ 0.24
HMGB1P09429 RN7SL11P-201ENST00000471305 293 ntBASIC16.52■□□□□ 0.24
HMGB1P09429 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGB1P09429 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HMGB1P09429 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB1P09429 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
HMGB1P09429 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HMGB1P09429 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.52■□□□□ 0.23
HMGB1P09429 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB1P09429 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB1P09429 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
HMGB1P09429 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB1P09429 KRT8P18-201ENST00000413425 1445 ntBASIC16.52■□□□□ 0.23
HMGB1P09429 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.52■□□□□ 0.23
HMGB1P09429 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB1P09429 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC16.52■□□□□ 0.23
HMGB1P09429 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.52■□□□□ 0.23
HMGB1P09429 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
HMGB1P09429 AC008132.1-202ENST00000342005 1389 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 NRADDP-202ENST00000641269 1585 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB1P09429 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HMGB1P09429 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HMGB1P09429 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB1P09429 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB1P09429 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGB1P09429 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB1P09429 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HMGB1P09429 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB1P09429 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 AC136604.1-202ENST00000425471 771 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB1P09429 AC244107.1-201ENST00000442033 332 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 Z97180.1-201ENST00000445173 988 ntBASIC16.51■□□□□ 0.23
HMGB1P09429 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms