RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 NISCHQ9Y2I1 1504 aa28.63■■■□□ 2.17
ATP2C1-201ENST00000328560 SHROOM4Q9ULL8 1493 aa24.93■■□□□ 1.58
ATP2C1-201ENST00000328560 SUPT5HO00267 1087 aaKnown RBP24.51■■□□□ 1.51
ATP2C1-201ENST00000328560 DCAF8L2P0C7V8 631 aa24.4■■□□□ 1.5
ATP2C1-201ENST00000328560 CCDC180Q9P1Z9 1646 aa24.22■■□□□ 1.47
ATP2C1-201ENST00000328560 ZCCHC6Q5VYS8 1495 aaKnown RBP24.17■■□□□ 1.46
ATP2C1-201ENST00000328560 CHIC1Q5VXU3 224 aa23.61■■□□□ 1.37
ATP2C1-201ENST00000328560 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
ATP2C1-201ENST00000328560 DCAF1Q9Y4B6 1507 aa23.34■■□□□ 1.33
ATP2C1-201ENST00000328560 PCGF6Q9BYE7 350 aa23.11■■□□□ 1.29
ATP2C1-201ENST00000328560 LOC105371045A0A1W2PR82 267 aa23.09■■□□□ 1.29
ATP2C1-201ENST00000328560 ABCC9O60706 1549 aa22.98■■□□□ 1.27
ATP2C1-201ENST00000328560 HRCP23327 699 aa22.94■■□□□ 1.26
ATP2C1-201ENST00000328560 SCRIBQ14160 1630 aa22.93■■□□□ 1.26
ATP2C1-201ENST00000328560 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
ATP2C1-201ENST00000328560 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
ATP2C1-201ENST00000328560 TRIM41Q8WV44 630 aa22.71■■□□□ 1.23
ATP2C1-201ENST00000328560 EHMT2Q96KQ7 1210 aa22.69■■□□□ 1.22
ATP2C1-201ENST00000328560 PPARGC1BQ86YN6 1023 aaKnown RBP22.66■■□□□ 1.22
ATP2C1-201ENST00000328560 NACADO15069 1562 aa22.62■■□□□ 1.21
ATP2C1-201ENST00000328560 RB1CC1Q8TDY2 1594 aa22.5■■□□□ 1.19
ATP2C1-201ENST00000328560 CECR2Q9BXF3 1484 aa22.49■■□□□ 1.19
ATP2C1-201ENST00000328560 TRIM26Q12899 539 aaPredicted RBP22.48■■□□□ 1.19
ATP2C1-201ENST00000328560 MROH2BQ7Z745 1585 aa22.34■■□□□ 1.17
ATP2C1-201ENST00000328560 WIZO95785 1651 aa22.19■■□□□ 1.14
ATP2C1-201ENST00000328560 PABPN1Q86U42 306 aaKnown RBP eCLIP22.06■■□□□ 1.12
ATP2C1-201ENST00000328560 BAZ1AQ9NRL2 1556 aaPredicted RBP22.01■■□□□ 1.11
ATP2C1-201ENST00000328560 ZEB1P37275 1124 aaPredicted RBP21.95■■□□□ 1.1
ATP2C1-201ENST00000328560 TTBK1Q5TCY1 1321 aaPredicted RBP21.93■■□□□ 1.1
ATP2C1-201ENST00000328560 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
ATP2C1-201ENST00000328560 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
ATP2C1-201ENST00000328560 TOP2AP11388 1531 aaKnown RBP21.76■■□□□ 1.07
ATP2C1-201ENST00000328560 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
ATP2C1-201ENST00000328560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.75■■□□□ 1.07
ATP2C1-201ENST00000328560 UBTFP17480 764 aaKnown RBP21.72■■□□□ 1.07
ATP2C1-201ENST00000328560 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
ATP2C1-201ENST00000328560 EIF4G1Q04637 1599 aaKnown RBP21.68■■□□□ 1.06
ATP2C1-201ENST00000328560 SOGA1O94964 1423 aa21.67■■□□□ 1.06
ATP2C1-201ENST00000328560 SMARCA2P51531 1590 aa21.66■■□□□ 1.06
ATP2C1-201ENST00000328560 UNC13AQ9UPW8 1703 aa21.62■■□□□ 1.05
ATP2C1-201ENST00000328560 CSRNP3Q8WYN3 585 aa21.61■■□□□ 1.05
ATP2C1-201ENST00000328560 CEP162Q5TB80 1403 aa21.56■■□□□ 1.04
ATP2C1-201ENST00000328560 RUSC2Q8N2Y8 1516 aa21.55■■□□□ 1.04
ATP2C1-201ENST00000328560 BICRAQ9NZM4 1560 aa21.5■■□□□ 1.03
ATP2C1-201ENST00000328560 RANGAP1P46060 587 aaPredicted RBP21.48■■□□□ 1.03
ATP2C1-201ENST00000328560 TNIKQ9UKE5 1360 aa21.45■■□□□ 1.03
ATP2C1-201ENST00000328560 WRNQ14191 1432 aaPredicted RBP eCLIP21.44■■□□□ 1.02
ATP2C1-201ENST00000328560 BAZ1BQ9UIG0 1483 aaKnown RBP21.38■■□□□ 1.01
ATP2C1-201ENST00000328560 EEA1Q15075 1411 aa21.38■■□□□ 1.01
ATP2C1-201ENST00000328560 ATAD2BQ9ULI0 1458 aa21.34■■□□□ 1.01
ATP2C1-201ENST00000328560 GOLGA3Q08378 1498 aa21.33■■□□□ 1
ATP2C1-201ENST00000328560 HNRNPUL2Q1KMD3 747 aaKnown RBP21.29■■□□□ 1
ATP2C1-201ENST00000328560 APLP2Q06481 763 aa21.23■□□□□ 0.99
ATP2C1-201ENST00000328560 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
ATP2C1-201ENST00000328560 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
ATP2C1-201ENST00000328560 DIEXFQ68CQ4 756 aaKnown RBP21.21■□□□□ 0.99
ATP2C1-201ENST00000328560 SCAF1Q9H7N4 1312 aaKnown RBP21.2■□□□□ 0.99
ATP2C1-201ENST00000328560 CEP164Q9UPV0 1460 aa21.19■□□□□ 0.98
ATP2C1-201ENST00000328560 CLIP1P30622 1438 aa21.18■□□□□ 0.98
ATP2C1-201ENST00000328560 RAPGEF2Q9Y4G8 1499 aa21.1■□□□□ 0.97
ATP2C1-201ENST00000328560 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
ATP2C1-201ENST00000328560 VPS8Q8N3P4 1428 aa21■□□□□ 0.95
ATP2C1-201ENST00000328560 KIF21BO75037 1637 aa21■□□□□ 0.95
ATP2C1-201ENST00000328560 ZNF316A6NFI3 1004 aaPredicted RBP20.99■□□□□ 0.95
ATP2C1-201ENST00000328560 ACIN1Q9UKV3 1341 aaKnown RBP20.98■□□□□ 0.95
ATP2C1-201ENST00000328560 NCAPD3P42695 1498 aa20.96■□□□□ 0.95
ATP2C1-201ENST00000328560 CENPBP07199 599 aaPredicted RBP20.92■□□□□ 0.94
ATP2C1-201ENST00000328560 YTHDC1Q96MU7 727 aaKnown RBP20.91■□□□□ 0.94
ATP2C1-201ENST00000328560 TOP2BQ02880 1626 aa20.88■□□□□ 0.93
ATP2C1-201ENST00000328560 HMGXB3Q12766 1538 aa20.85■□□□□ 0.93
ATP2C1-201ENST00000328560 GTF3C3Q9Y5Q9 886 aa20.84■□□□□ 0.93
ATP2C1-201ENST00000328560 KANK4Q5T7N3 995 aaPredicted RBP20.83■□□□□ 0.93
ATP2C1-201ENST00000328560 ITGAEP38570 1179 aa20.8■□□□□ 0.92
ATP2C1-201ENST00000328560 KIF27Q86VH2 1401 aa20.78■□□□□ 0.92
ATP2C1-201ENST00000328560 CUX1P39880 1505 aa20.76■□□□□ 0.91
ATP2C1-201ENST00000328560 PRXQ9BXM0 1461 aa20.76■□□□□ 0.91
ATP2C1-201ENST00000328560 MIER1Q8N108 512 aa20.76■□□□□ 0.91
ATP2C1-201ENST00000328560 CFTRP13569 1480 aa20.72■□□□□ 0.91
ATP2C1-201ENST00000328560 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
ATP2C1-201ENST00000328560 ARAP1Q96P48 1450 aa20.71■□□□□ 0.91
ATP2C1-201ENST00000328560 CADPSQ9ULU8 1353 aa20.67■□□□□ 0.9
ATP2C1-201ENST00000328560 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
ATP2C1-201ENST00000328560 ATP1B4Q9UN42 357 aaPredicted RBP20.66■□□□□ 0.9
ATP2C1-201ENST00000328560 PELP1Q8IZL8 1130 aaKnown RBP20.65■□□□□ 0.9
ATP2C1-201ENST00000328560 CUX2O14529 1486 aa20.62■□□□□ 0.89
ATP2C1-201ENST00000328560 P3H3Q8IVL6 736 aa20.62■□□□□ 0.89
ATP2C1-201ENST00000328560 DHX57Q6P158 1386 aaKnown RBP20.58■□□□□ 0.89
ATP2C1-201ENST00000328560 IGF1RP08069 1367 aa20.55■□□□□ 0.88
ATP2C1-201ENST00000328560 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
ATP2C1-201ENST00000328560 CARMIL1Q5VZK9 1371 aa20.52■□□□□ 0.88
ATP2C1-201ENST00000328560 CCNB3Q8WWL7 1395 aa20.52■□□□□ 0.88
ATP2C1-201ENST00000328560 CC2D2AQ9P2K1 1620 aa20.49■□□□□ 0.87
ATP2C1-201ENST00000328560 FAM50AQ14320 339 aaKnown RBP20.48■□□□□ 0.87
ATP2C1-201ENST00000328560 CLSPNQ9HAW4 1339 aa20.47■□□□□ 0.87
ATP2C1-201ENST00000328560 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
ATP2C1-201ENST00000328560 RRBP1Q9P2E9 1410 aaKnown RBP20.45■□□□□ 0.86
ATP2C1-201ENST00000328560 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
ATP2C1-201ENST00000328560 RAB3GAP2Q9H2M9 1393 aa20.36■□□□□ 0.85
ATP2C1-201ENST00000328560 RAD54L2Q9Y4B4 1467 aa20.33■□□□□ 0.85
ATP2C1-201ENST00000328560 PHLDB1Q86UU1 1377 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms