RNA–Protein interactions for RNA: ENST00000540804.5

MSRB3-209, Transcript of methionine sulfoxide reductase B3, humanhuman

TSL 2 BASIC

Gene MSRB3, Length 884 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-209ENST00000540804 NISCHQ9Y2I1 1504 aa36.05■■■■□ 3.36
MSRB3-209ENST00000540804 ABCC9O60706 1549 aa32.2■■■□□ 2.74
MSRB3-209ENST00000540804 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
MSRB3-209ENST00000540804 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
MSRB3-209ENST00000540804 DCAF8L2P0C7V8 631 aa30.5■■■□□ 2.47
MSRB3-209ENST00000540804 NACADO15069 1562 aa30.4■■■□□ 2.46
MSRB3-209ENST00000540804 DNAJC5BQ9UF47 199 aa30.14■■■□□ 2.42
MSRB3-209ENST00000540804 PABPN1Q86U42 306 aaKnown RBP eCLIP30.07■■■□□ 2.4
MSRB3-209ENST00000540804 MYO15BQ96JP2 1530 aa29.99■■■□□ 2.39
MSRB3-209ENST00000540804 ZCCHC6Q5VYS8 1495 aaKnown RBP29.91■■■□□ 2.38
MSRB3-209ENST00000540804 UNC13AQ9UPW8 1703 aa29.89■■■□□ 2.38
MSRB3-209ENST00000540804 BICRAQ9NZM4 1560 aa29.77■■■□□ 2.36
MSRB3-209ENST00000540804 DCAF1Q9Y4B6 1507 aa29.7■■■□□ 2.34
MSRB3-209ENST00000540804 SCRIBQ14160 1630 aa29.47■■■□□ 2.31
MSRB3-209ENST00000540804 SHROOM4Q9ULL8 1493 aa29.21■■■□□ 2.27
MSRB3-209ENST00000540804 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
MSRB3-209ENST00000540804 EIF4G1Q04637 1599 aaKnown RBP29■■■□□ 2.23
MSRB3-209ENST00000540804 CECR2Q9BXF3 1484 aa28.93■■■□□ 2.22
MSRB3-209ENST00000540804 NCAPD3P42695 1498 aa28.11■■■□□ 2.09
MSRB3-209ENST00000540804 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
MSRB3-209ENST00000540804 SMARCA4P51532 1647 aa28.07■■■□□ 2.08
MSRB3-209ENST00000540804 SMARCA2P51531 1590 aa27.93■■■□□ 2.06
MSRB3-209ENST00000540804 BAZ1AQ9NRL2 1556 aaPredicted RBP27.93■■■□□ 2.06
MSRB3-209ENST00000540804 HMGXB3Q12766 1538 aa27.87■■■□□ 2.05
MSRB3-209ENST00000540804 MROH2BQ7Z745 1585 aa27.84■■■□□ 2.05
MSRB3-209ENST00000540804 BAZ1BQ9UIG0 1483 aaKnown RBP27.81■■■□□ 2.04
MSRB3-209ENST00000540804 PEG3Q9GZU2 1588 aa27.74■■■□□ 2.03
MSRB3-209ENST00000540804 NESP48681 1621 aa27.73■■■□□ 2.03
MSRB3-209ENST00000540804 ERCC6Q03468 1493 aa27.72■■■□□ 2.03
MSRB3-209ENST00000540804 CUX2O14529 1486 aa27.55■■■□□ 2
MSRB3-209ENST00000540804 WIZO95785 1651 aa27.49■■□□□ 1.99
MSRB3-209ENST00000540804 DNAJC5Q9H3Z4 198 aa27.43■■□□□ 1.98
MSRB3-209ENST00000540804 LAMC3Q9Y6N6 1575 aa27.4■■□□□ 1.98
MSRB3-209ENST00000540804 RSF1Q96T23 1441 aaPredicted RBP27.32■■□□□ 1.96
MSRB3-209ENST00000540804 THOC2Q8NI27 1593 aaKnown RBP27.31■■□□□ 1.96
MSRB3-209ENST00000540804 CADPSQ9ULU8 1353 aa27.29■■□□□ 1.96
MSRB3-209ENST00000540804 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
MSRB3-209ENST00000540804 PDS5BQ9NTI5 1447 aa27.27■■□□□ 1.96
MSRB3-209ENST00000540804 TOP2AP11388 1531 aaKnown RBP27.11■■□□□ 1.93
MSRB3-209ENST00000540804 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
MSRB3-209ENST00000540804 CFTRP13569 1480 aa27■■□□□ 1.91
MSRB3-209ENST00000540804 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
MSRB3-209ENST00000540804 CEP164Q9UPV0 1460 aa26.98■■□□□ 1.91
MSRB3-209ENST00000540804 WDR62O43379 1518 aa26.96■■□□□ 1.91
MSRB3-209ENST00000540804 CCDC88BA6NC98 1476 aa26.87■■□□□ 1.89
MSRB3-209ENST00000540804 URB2Q14146 1524 aaKnown RBP26.79■■□□□ 1.88
MSRB3-209ENST00000540804 PRDM2Q13029 1718 aa26.61■■□□□ 1.85
MSRB3-209ENST00000540804 TOPBP1Q92547 1522 aa26.49■■□□□ 1.83
MSRB3-209ENST00000540804 ZNF608Q9ULD9 1512 aaPredicted RBP26.46■■□□□ 1.83
MSRB3-209ENST00000540804 IFT140Q96RY7 1462 aa26.42■■□□□ 1.82
MSRB3-209ENST00000540804 TRIM41Q8WV44 630 aa26.39■■□□□ 1.82
MSRB3-209ENST00000540804 OSCARQ8IYS5 282 aa26.38■■□□□ 1.81
MSRB3-209ENST00000540804 DNMBPQ6XZF7 1577 aa26.37■■□□□ 1.81
MSRB3-209ENST00000540804 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
MSRB3-209ENST00000540804 SUPT5HO00267 1087 aaKnown RBP26.34■■□□□ 1.81
MSRB3-209ENST00000540804 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
MSRB3-209ENST00000540804 EIF4G3O43432 1585 aaKnown RBP26.24■■□□□ 1.79
MSRB3-209ENST00000540804 AQRO60306 1485 aaKnown RBP eCLIP26.24■■□□□ 1.79
MSRB3-209ENST00000540804 TARBP1Q13395 1621 aaKnown RBP26.23■■□□□ 1.79
MSRB3-209ENST00000540804 RAD54L2Q9Y4B4 1467 aa26.22■■□□□ 1.79
MSRB3-209ENST00000540804 SOGA1O94964 1423 aa26.14■■□□□ 1.78
MSRB3-209ENST00000540804 CUX1P39880 1505 aa26.13■■□□□ 1.77
MSRB3-209ENST00000540804 TDRD9Q8NDG6 1382 aaKnown RBP26.12■■□□□ 1.77
MSRB3-209ENST00000540804 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
MSRB3-209ENST00000540804 FBLN2P98095 1184 aa26.06■■□□□ 1.76
MSRB3-209ENST00000540804 RIMBP3CA6NJZ7 1639 aa26.02■■□□□ 1.76
MSRB3-209ENST00000540804 RIMBP3BA6NNM3 1639 aa26.02■■□□□ 1.76
MSRB3-209ENST00000540804 RIMBP3Q9UFD9 1639 aa26.02■■□□□ 1.76
MSRB3-209ENST00000540804 CHD1O14646 1710 aa26■■□□□ 1.75
MSRB3-209ENST00000540804 ARHGEF11O15085 1522 aa25.96■■□□□ 1.75
MSRB3-209ENST00000540804 SNAPC4Q5SXM2 1469 aa25.95■■□□□ 1.74
MSRB3-209ENST00000540804 GRIN2BQ13224 1484 aa25.85■■□□□ 1.73
MSRB3-209ENST00000540804 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
MSRB3-209ENST00000540804 CHMP7Q8WUX9 453 aaPredicted RBP25.84■■□□□ 1.73
MSRB3-209ENST00000540804 CYB5RLQ6IPT4 315 aa25.83■■□□□ 1.73
MSRB3-209ENST00000540804 GAPVD1Q14C86 1478 aa25.8■■□□□ 1.72
MSRB3-209ENST00000540804 MAGI1Q96QZ7 1491 aaPredicted RBP25.8■■□□□ 1.72
MSRB3-209ENST00000540804 ABCA10Q8WWZ4 1543 aa25.78■■□□□ 1.72
MSRB3-209ENST00000540804 ARAP1Q96P48 1450 aa25.75■■□□□ 1.71
MSRB3-209ENST00000540804 SYNJ2O15056 1496 aa25.74■■□□□ 1.71
MSRB3-209ENST00000540804 WRNQ14191 1432 aaPredicted RBP eCLIP25.74■■□□□ 1.71
MSRB3-209ENST00000540804 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
MSRB3-209ENST00000540804 PBRM1Q86U86 1689 aa25.73■■□□□ 1.71
MSRB3-209ENST00000540804 ABCA5Q8WWZ7 1642 aa25.73■■□□□ 1.71
MSRB3-209ENST00000540804 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
MSRB3-209ENST00000540804 TOP2BQ02880 1626 aa25.69■■□□□ 1.7
MSRB3-209ENST00000540804 BIVM-ERCC5R4GMW8 1640 aa25.67■■□□□ 1.7
MSRB3-209ENST00000540804 GRIN2AQ12879 1464 aa25.53■■□□□ 1.68
MSRB3-209ENST00000540804 ADAMTS12P58397 1594 aa25.53■■□□□ 1.68
MSRB3-209ENST00000540804 TRHP20396 242 aaPredicted RBP25.49■■□□□ 1.67
MSRB3-209ENST00000540804 CEP170Q5SW79 1584 aa25.47■■□□□ 1.67
MSRB3-209ENST00000540804 FHAD1B1AJZ9 1412 aa25.46■■□□□ 1.67
MSRB3-209ENST00000540804 NUP160Q12769 1436 aa25.44■■□□□ 1.66
MSRB3-209ENST00000540804 ERCC6L2Q5T890 1561 aa25.44■■□□□ 1.66
MSRB3-209ENST00000540804 ERICH3Q5RHP9 1530 aa25.43■■□□□ 1.66
MSRB3-209ENST00000540804 SHROOM2Q13796 1616 aa25.26■■□□□ 1.63
MSRB3-209ENST00000540804 IGF1RP08069 1367 aa25.25■■□□□ 1.63
MSRB3-209ENST00000540804 PRG4Q92954 1404 aaPredicted RBP25.22■■□□□ 1.63
MSRB3-209ENST00000540804 JPH4Q96JJ6 628 aa25.22■■□□□ 1.63
MSRB3-209ENST00000540804 KIF27Q86VH2 1401 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms