Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 AC138035.3-201ENST00000622706 2791 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 RHOC-205ENST00000369636 786 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A1P27658 KRT18P44-201ENST00000416086 1285 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 HSFY1P1-201ENST00000423928 1178 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A1P27658 RN7SL788P-201ENST00000460504 316 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 RN7SL351P-201ENST00000469306 248 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC025186.1-201ENST00000478174 870 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC12.29□□□□□ -0.44
COL8A1P27658 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 AC120498.5-201ENST00000561757 299 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 RN7SL605P-201ENST00000577229 281 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC132812.1-201ENST00000583145 892 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC12.29□□□□□ -0.44
COL8A1P27658 ACTG1P22-201ENST00000603793 1099 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 PRMT1P1-201ENST00000604252 1009 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A1P27658 AL391262.2-201ENST00000622466 494 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC245369.7-201ENST00000631386 350 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 AC005865.2-202ENST00000635814 725 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 LINC00528-201ENST00000600723 2160 ntBASIC12.29□□□□□ -0.44
COL8A1P27658 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
COL8A1P27658 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A1P27658 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A1P27658 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms