Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AC105129.2-201ENST00000559536 390 ntBASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 AC073869.2-201ENST00000417338 1026 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 AP000358.1-201ENST00000456260 156 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 CHCHD2P2-201ENST00000503744 321 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 GOLGA2P8-201ENST00000505201 779 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 MIR3907-201ENST00000579424 151 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 AC090643.2-201ENST00000623442 2029 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 KRT8P19-201ENST00000551916 1455 ntBASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TRIM39Q9HCM9 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 MARK2P16-201ENST00000605714 1723 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms