RNA–Protein interactions for RNA: ENST00000431889.6

SMARCE1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2 BASIC

Gene SMARCE1, Length 1,569 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-205ENST00000431889 NISCHQ9Y2I1 1504 aa35.61■■■■□ 3.29
SMARCE1-205ENST00000431889 ABCC9O60706 1549 aa32.05■■■□□ 2.72
SMARCE1-205ENST00000431889 CCDC180Q9P1Z9 1646 aa31.86■■■□□ 2.69
SMARCE1-205ENST00000431889 RB1CC1Q8TDY2 1594 aa30.35■■■□□ 2.45
SMARCE1-205ENST00000431889 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
SMARCE1-205ENST00000431889 NACADO15069 1562 aa30.11■■■□□ 2.41
SMARCE1-205ENST00000431889 DNAJC5BQ9UF47 199 aa30.07■■■□□ 2.4
SMARCE1-205ENST00000431889 PABPN1Q86U42 306 aaKnown RBP eCLIP29.92■■■□□ 2.38
SMARCE1-205ENST00000431889 UNC13AQ9UPW8 1703 aa29.82■■■□□ 2.36
SMARCE1-205ENST00000431889 MYO15BQ96JP2 1530 aa29.57■■■□□ 2.32
SMARCE1-205ENST00000431889 BICRAQ9NZM4 1560 aa29.54■■■□□ 2.32
SMARCE1-205ENST00000431889 ZCCHC6Q5VYS8 1495 aaKnown RBP29.51■■■□□ 2.31
SMARCE1-205ENST00000431889 SCRIBQ14160 1630 aa29.26■■■□□ 2.27
SMARCE1-205ENST00000431889 DCAF1Q9Y4B6 1507 aa29.26■■■□□ 2.27
SMARCE1-205ENST00000431889 CC2D2AQ9P2K1 1620 aa28.89■■■□□ 2.21
SMARCE1-205ENST00000431889 SHROOM4Q9ULL8 1493 aa28.87■■■□□ 2.21
SMARCE1-205ENST00000431889 EIF4G1Q04637 1599 aaKnown RBP28.8■■■□□ 2.2
SMARCE1-205ENST00000431889 CECR2Q9BXF3 1484 aa28.77■■■□□ 2.2
SMARCE1-205ENST00000431889 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
SMARCE1-205ENST00000431889 NCAPD3P42695 1498 aa27.79■■■□□ 2.04
SMARCE1-205ENST00000431889 ATAD2BQ9ULI0 1458 aa27.79■■■□□ 2.04
SMARCE1-205ENST00000431889 SMARCA2P51531 1590 aa27.65■■■□□ 2.02
SMARCE1-205ENST00000431889 ERCC6Q03468 1493 aa27.61■■■□□ 2.01
SMARCE1-205ENST00000431889 BAZ1AQ9NRL2 1556 aaPredicted RBP27.6■■■□□ 2.01
SMARCE1-205ENST00000431889 HMGXB3Q12766 1538 aa27.59■■■□□ 2.01
SMARCE1-205ENST00000431889 NESP48681 1621 aa27.57■■■□□ 2
SMARCE1-205ENST00000431889 BAZ1BQ9UIG0 1483 aaKnown RBP27.55■■■□□ 2
SMARCE1-205ENST00000431889 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
SMARCE1-205ENST00000431889 PEG3Q9GZU2 1588 aa27.41■■□□□ 1.98
SMARCE1-205ENST00000431889 DNAJC5Q9H3Z4 198 aa27.41■■□□□ 1.98
SMARCE1-205ENST00000431889 CUX2O14529 1486 aa27.4■■□□□ 1.98
SMARCE1-205ENST00000431889 WIZO95785 1651 aa27.26■■□□□ 1.95
SMARCE1-205ENST00000431889 KIF21AQ7Z4S6 1674 aa27.19■■□□□ 1.94
SMARCE1-205ENST00000431889 LAMC3Q9Y6N6 1575 aa27.18■■□□□ 1.94
SMARCE1-205ENST00000431889 THOC2Q8NI27 1593 aaKnown RBP27.16■■□□□ 1.94
SMARCE1-205ENST00000431889 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
SMARCE1-205ENST00000431889 CADPSQ9ULU8 1353 aa27■■□□□ 1.91
SMARCE1-205ENST00000431889 RSF1Q96T23 1441 aaPredicted RBP26.93■■□□□ 1.9
SMARCE1-205ENST00000431889 MRC2Q9UBG0 1479 aa26.84■■□□□ 1.89
SMARCE1-205ENST00000431889 TOP2AP11388 1531 aaKnown RBP26.78■■□□□ 1.88
SMARCE1-205ENST00000431889 CEP164Q9UPV0 1460 aa26.76■■□□□ 1.87
SMARCE1-205ENST00000431889 FANCD2Q9BXW9 1451 aa26.75■■□□□ 1.87
SMARCE1-205ENST00000431889 WDR62O43379 1518 aa26.75■■□□□ 1.87
SMARCE1-205ENST00000431889 CFTRP13569 1480 aa26.69■■□□□ 1.86
SMARCE1-205ENST00000431889 URB2Q14146 1524 aaKnown RBP26.56■■□□□ 1.84
SMARCE1-205ENST00000431889 CCDC88BA6NC98 1476 aa26.54■■□□□ 1.84
SMARCE1-205ENST00000431889 PRDM2Q13029 1718 aa26.47■■□□□ 1.83
SMARCE1-205ENST00000431889 TRIM41Q8WV44 630 aa26.44■■□□□ 1.82
SMARCE1-205ENST00000431889 ZNF608Q9ULD9 1512 aaPredicted RBP26.27■■□□□ 1.8
SMARCE1-205ENST00000431889 TOPBP1Q92547 1522 aa26.25■■□□□ 1.79
SMARCE1-205ENST00000431889 OSCARQ8IYS5 282 aa26.24■■□□□ 1.79
SMARCE1-205ENST00000431889 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
SMARCE1-205ENST00000431889 DNMBPQ6XZF7 1577 aa26.12■■□□□ 1.77
SMARCE1-205ENST00000431889 EIF4G3O43432 1585 aaKnown RBP26.08■■□□□ 1.77
SMARCE1-205ENST00000431889 ABCC8Q09428 1581 aa26.04■■□□□ 1.76
SMARCE1-205ENST00000431889 AQRO60306 1485 aaKnown RBP eCLIP26.04■■□□□ 1.765e-8■■■□□ 18.8
SMARCE1-205ENST00000431889 TARBP1Q13395 1621 aaKnown RBP26.01■■□□□ 1.75
SMARCE1-205ENST00000431889 POLA1P09884 1462 aaPredicted RBP25.99■■□□□ 1.75
SMARCE1-205ENST00000431889 RAD54L2Q9Y4B4 1467 aa25.98■■□□□ 1.75
SMARCE1-205ENST00000431889 SUPT5HO00267 1087 aaKnown RBP25.98■■□□□ 1.75
SMARCE1-205ENST00000431889 RIMBP3CA6NJZ7 1639 aa25.97■■□□□ 1.75
SMARCE1-205ENST00000431889 RIMBP3BA6NNM3 1639 aa25.97■■□□□ 1.75
SMARCE1-205ENST00000431889 RIMBP3Q9UFD9 1639 aa25.97■■□□□ 1.75
SMARCE1-205ENST00000431889 CHD1O14646 1710 aa25.93■■□□□ 1.74
SMARCE1-205ENST00000431889 FBLN2P98095 1184 aa25.92■■□□□ 1.74
SMARCE1-205ENST00000431889 TDRD9Q8NDG6 1382 aaKnown RBP25.89■■□□□ 1.74
SMARCE1-205ENST00000431889 SOGA1O94964 1423 aa25.88■■□□□ 1.73
SMARCE1-205ENST00000431889 FGD5Q6ZNL6 1462 aa25.86■■□□□ 1.73
SMARCE1-205ENST00000431889 CUX1P39880 1505 aa25.85■■□□□ 1.73
SMARCE1-205ENST00000431889 ARHGEF11O15085 1522 aa25.84■■□□□ 1.73
SMARCE1-205ENST00000431889 SNAPC4Q5SXM2 1469 aa25.74■■□□□ 1.71
SMARCE1-205ENST00000431889 CYB5RLQ6IPT4 315 aa25.74■■□□□ 1.71
SMARCE1-205ENST00000431889 WDR97A6NE52 1622 aa25.64■■□□□ 1.69
SMARCE1-205ENST00000431889 CHMP7Q8WUX9 453 aaPredicted RBP25.63■■□□□ 1.69
SMARCE1-205ENST00000431889 ARAP1Q96P48 1450 aa25.61■■□□□ 1.69
SMARCE1-205ENST00000431889 PBRM1Q86U86 1689 aa25.6■■□□□ 1.69
SMARCE1-205ENST00000431889 GRIN2BQ13224 1484 aa25.59■■□□□ 1.69
SMARCE1-205ENST00000431889 GAPVD1Q14C86 1478 aa25.55■■□□□ 1.68
SMARCE1-205ENST00000431889 MAGI1Q96QZ7 1491 aaPredicted RBP25.55■■□□□ 1.68
SMARCE1-205ENST00000431889 CLASP1Q7Z460 1538 aa25.52■■□□□ 1.68
SMARCE1-205ENST00000431889 SYNJ2O15056 1496 aa25.5■■□□□ 1.67
SMARCE1-205ENST00000431889 SYNJ1O43426 1573 aa25.5■■□□□ 1.67
SMARCE1-205ENST00000431889 ABCA5Q8WWZ7 1642 aa25.48■■□□□ 1.67
SMARCE1-205ENST00000431889 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
SMARCE1-205ENST00000431889 TRHP20396 242 aaPredicted RBP25.47■■□□□ 1.67
SMARCE1-205ENST00000431889 WRNQ14191 1432 aaPredicted RBP eCLIP25.39■■□□□ 1.66
SMARCE1-205ENST00000431889 BIVM-ERCC5R4GMW8 1640 aa25.39■■□□□ 1.66
SMARCE1-205ENST00000431889 TOP2BQ02880 1626 aa25.39■■□□□ 1.65
SMARCE1-205ENST00000431889 ADAMTS12P58397 1594 aa25.3■■□□□ 1.64
SMARCE1-205ENST00000431889 GRIN2AQ12879 1464 aa25.29■■□□□ 1.64
SMARCE1-205ENST00000431889 ERCC6L2Q5T890 1561 aa25.29■■□□□ 1.64
SMARCE1-205ENST00000431889 CEP170Q5SW79 1584 aa25.26■■□□□ 1.63
SMARCE1-205ENST00000431889 FHAD1B1AJZ9 1412 aa25.18■■□□□ 1.62
SMARCE1-205ENST00000431889 NUP160Q12769 1436 aa25.16■■□□□ 1.62
SMARCE1-205ENST00000431889 ERICH3Q5RHP9 1530 aa25.14■■□□□ 1.61
SMARCE1-205ENST00000431889 SHROOM2Q13796 1616 aa25.06■■□□□ 1.6
SMARCE1-205ENST00000431889 PRG4Q92954 1404 aaPredicted RBP25■■□□□ 1.59
SMARCE1-205ENST00000431889 JPH4Q96JJ6 628 aa24.97■■□□□ 1.59
SMARCE1-205ENST00000431889 RUSC2Q8N2Y8 1516 aa24.95■■□□□ 1.58
SMARCE1-205ENST00000431889 IGF1RP08069 1367 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms