RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 AEBP2Q6ZN18 517 aaPredicted RBP33.89■■■■□ 3.02
SKA1-202ENST00000398452 NISCHQ9Y2I1 1504 aa32.74■■■□□ 2.83
SKA1-202ENST00000398452 CHIC1Q5VXU3 224 aa32.27■■■□□ 2.76
SKA1-202ENST00000398452 SENP3Q9H4L4 574 aaPredicted RBP29■■■□□ 2.23
SKA1-202ENST00000398452 CCDC180Q9P1Z9 1646 aa28.77■■■□□ 2.2
SKA1-202ENST00000398452 ABCC9O60706 1549 aa28.73■■■□□ 2.19
SKA1-202ENST00000398452 PHF23Q9BUL5 403 aaPredicted RBP28.61■■■□□ 2.17
SKA1-202ENST00000398452 ZCCHC6Q5VYS8 1495 aaKnown RBP27.4■■□□□ 1.98
SKA1-202ENST00000398452 DCAF8L2P0C7V8 631 aa27.33■■□□□ 1.97
SKA1-202ENST00000398452 RB1CC1Q8TDY2 1594 aa27.24■■□□□ 1.95
SKA1-202ENST00000398452 DCAF1Q9Y4B6 1507 aa27.1■■□□□ 1.93
SKA1-202ENST00000398452 NACADO15069 1562 aa27.05■■□□□ 1.92
SKA1-202ENST00000398452 FOXD1Q16676 465 aa26.97■■□□□ 1.91
SKA1-202ENST00000398452 MYO15BQ96JP2 1530 aa26.95■■□□□ 1.91
SKA1-202ENST00000398452 DNAJC5BQ9UF47 199 aa26.88■■□□□ 1.89
SKA1-202ENST00000398452 PABPN1Q86U42 306 aaKnown RBP eCLIP26.85■■□□□ 1.89
SKA1-202ENST00000398452 UNC13AQ9UPW8 1703 aa26.64■■□□□ 1.85
SKA1-202ENST00000398452 BICRAQ9NZM4 1560 aa26.45■■□□□ 1.82
SKA1-202ENST00000398452 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
SKA1-202ENST00000398452 SCRIBQ14160 1630 aa26.36■■□□□ 1.81
SKA1-202ENST00000398452 CC2D2AQ9P2K1 1620 aa25.87■■□□□ 1.73
SKA1-202ENST00000398452 PLPPR3Q6T4P5 718 aa25.82■■□□□ 1.72
SKA1-202ENST00000398452 EIF4G1Q04637 1599 aaKnown RBP25.81■■□□□ 1.72
SKA1-202ENST00000398452 CECR2Q9BXF3 1484 aa25.8■■□□□ 1.72
SKA1-202ENST00000398452 BAZ1AQ9NRL2 1556 aaPredicted RBP25.38■■□□□ 1.65
SKA1-202ENST00000398452 MSH5O43196 834 aa25.31■■□□□ 1.64
SKA1-202ENST00000398452 SUPT5HO00267 1087 aaKnown RBP25.29■■□□□ 1.64
SKA1-202ENST00000398452 SMARCA4P51532 1647 aa25.25■■□□□ 1.63
SKA1-202ENST00000398452 PPP6R1Q9UPN7 881 aa25.22■■□□□ 1.63
SKA1-202ENST00000398452 MROH2BQ7Z745 1585 aa25.22■■□□□ 1.63
SKA1-202ENST00000398452 RSF1Q96T23 1441 aaPredicted RBP25.21■■□□□ 1.63
SKA1-202ENST00000398452 PIAS4Q8N2W9 510 aaPredicted RBP25.2■■□□□ 1.62
SKA1-202ENST00000398452 ADRA2BP18089 450 aa25.13■■□□□ 1.61
SKA1-202ENST00000398452 SMARCA2P51531 1590 aa25.01■■□□□ 1.59
SKA1-202ENST00000398452 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
SKA1-202ENST00000398452 WIZO95785 1651 aa24.98■■□□□ 1.59
SKA1-202ENST00000398452 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
SKA1-202ENST00000398452 PEG3Q9GZU2 1588 aa24.95■■□□□ 1.58
SKA1-202ENST00000398452 BAZ1BQ9UIG0 1483 aaKnown RBP24.86■■□□□ 1.57
SKA1-202ENST00000398452 TOP2AP11388 1531 aaKnown RBP24.81■■□□□ 1.56
SKA1-202ENST00000398452 ERCC6Q03468 1493 aa24.78■■□□□ 1.56
SKA1-202ENST00000398452 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
SKA1-202ENST00000398452 NESP48681 1621 aa24.69■■□□□ 1.54
SKA1-202ENST00000398452 POTEDQ86YR6 584 aa24.61■■□□□ 1.53
SKA1-202ENST00000398452 CUX2O14529 1486 aa24.57■■□□□ 1.52
SKA1-202ENST00000398452 DNAJC5Q9H3Z4 198 aa24.54■■□□□ 1.52
SKA1-202ENST00000398452 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
SKA1-202ENST00000398452 LAMC3Q9Y6N6 1575 aa24.4■■□□□ 1.5
SKA1-202ENST00000398452 PDS5BQ9NTI5 1447 aa24.32■■□□□ 1.48
SKA1-202ENST00000398452 KIF21AQ7Z4S6 1674 aa24.31■■□□□ 1.48
SKA1-202ENST00000398452 CADPSQ9ULU8 1353 aa24.29■■□□□ 1.48
SKA1-202ENST00000398452 THOC2Q8NI27 1593 aaKnown RBP24.29■■□□□ 1.48
SKA1-202ENST00000398452 CFTRP13569 1480 aa24.15■■□□□ 1.46
SKA1-202ENST00000398452 MRC2Q9UBG0 1479 aa24.1■■□□□ 1.45
SKA1-202ENST00000398452 CEP164Q9UPV0 1460 aa24.04■■□□□ 1.44
SKA1-202ENST00000398452 FANCD2Q9BXW9 1451 aa24.03■■□□□ 1.44
SKA1-202ENST00000398452 WDR62O43379 1518 aa23.99■■□□□ 1.43
SKA1-202ENST00000398452 PRDM2Q13029 1718 aa23.97■■□□□ 1.43
SKA1-202ENST00000398452 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
SKA1-202ENST00000398452 WRNQ14191 1432 aaPredicted RBP eCLIP23.84■■□□□ 1.41
SKA1-202ENST00000398452 URB2Q14146 1524 aaKnown RBP23.82■■□□□ 1.4
SKA1-202ENST00000398452 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
SKA1-202ENST00000398452 SYNJ1O43426 1573 aa23.63■■□□□ 1.37
SKA1-202ENST00000398452 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
SKA1-202ENST00000398452 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
SKA1-202ENST00000398452 CUX1P39880 1505 aa23.62■■□□□ 1.37
SKA1-202ENST00000398452 OSCARQ8IYS5 282 aa23.6■■□□□ 1.37
SKA1-202ENST00000398452 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
SKA1-202ENST00000398452 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
SKA1-202ENST00000398452 ZNF608Q9ULD9 1512 aaPredicted RBP23.55■■□□□ 1.36
SKA1-202ENST00000398452 IFT140Q96RY7 1462 aa23.53■■□□□ 1.36
SKA1-202ENST00000398452 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
SKA1-202ENST00000398452 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
SKA1-202ENST00000398452 SOGA1O94964 1423 aa23.42■■□□□ 1.34
SKA1-202ENST00000398452 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.331e-7■■■□□ 15.7
SKA1-202ENST00000398452 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
SKA1-202ENST00000398452 EIF4G3O43432 1585 aaKnown RBP23.35■■□□□ 1.33
SKA1-202ENST00000398452 EEA1Q15075 1411 aa23.34■■□□□ 1.33
SKA1-202ENST00000398452 FBLN2P98095 1184 aa23.34■■□□□ 1.33
SKA1-202ENST00000398452 RAD54L2Q9Y4B4 1467 aa23.34■■□□□ 1.33
SKA1-202ENST00000398452 KIF27Q86VH2 1401 aa23.32■■□□□ 1.32
SKA1-202ENST00000398452 TARBP1Q13395 1621 aaKnown RBP23.31■■□□□ 1.32
SKA1-202ENST00000398452 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
SKA1-202ENST00000398452 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.32
SKA1-202ENST00000398452 CSRNP3Q8WYN3 585 aa23.22■■□□□ 1.31
SKA1-202ENST00000398452 RIMBP3CA6NJZ7 1639 aa23.22■■□□□ 1.31
SKA1-202ENST00000398452 RIMBP3BA6NNM3 1639 aa23.22■■□□□ 1.31
SKA1-202ENST00000398452 RIMBP3Q9UFD9 1639 aa23.22■■□□□ 1.31
SKA1-202ENST00000398452 CHD1O14646 1710 aa23.19■■□□□ 1.3
SKA1-202ENST00000398452 RUSC2Q8N2Y8 1516 aa23.18■■□□□ 1.3
SKA1-202ENST00000398452 ARHGEF11O15085 1522 aa23.15■■□□□ 1.3
SKA1-202ENST00000398452 WDR97A6NE52 1622 aa23.15■■□□□ 1.3
SKA1-202ENST00000398452 SCAF1Q9H7N4 1312 aaKnown RBP23.13■■□□□ 1.29
SKA1-202ENST00000398452 GAPVD1Q14C86 1478 aa23.13■■□□□ 1.29
SKA1-202ENST00000398452 CYB5RLQ6IPT4 315 aa23.13■■□□□ 1.29
SKA1-202ENST00000398452 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
SKA1-202ENST00000398452 CHMP7Q8WUX9 453 aaPredicted RBP23.1■■□□□ 1.29
SKA1-202ENST00000398452 MAPK8IP2Q13387 824 aaPredicted RBP23.07■■□□□ 1.28
SKA1-202ENST00000398452 ABCA5Q8WWZ7 1642 aa23.07■■□□□ 1.28
SKA1-202ENST00000398452 IGF1RP08069 1367 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms