RNA–Protein interactions for RNA: ENST00000541102.1

LTBR-209, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5 BASIC

Gene LTBR, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-209ENST00000541102 NISCHQ9Y2I1 1504 aa34.74■■■■□ 3.15
LTBR-209ENST00000541102 CCDC180Q9P1Z9 1646 aa30.91■■■□□ 2.54
LTBR-209ENST00000541102 ABCC9O60706 1549 aa30.68■■■□□ 2.5
LTBR-209ENST00000541102 DCAF8L2P0C7V8 631 aa29.37■■■□□ 2.29
LTBR-209ENST00000541102 RB1CC1Q8TDY2 1594 aa29.29■■■□□ 2.28
LTBR-209ENST00000541102 NACADO15069 1562 aa29.18■■■□□ 2.26
LTBR-209ENST00000541102 MYO15BQ96JP2 1530 aa28.85■■■□□ 2.21
LTBR-209ENST00000541102 ZCCHC6Q5VYS8 1495 aaKnown RBP28.85■■■□□ 2.21
LTBR-209ENST00000541102 PABPN1Q86U42 306 aaKnown RBP eCLIP28.7■■■□□ 2.18
LTBR-209ENST00000541102 DCAF1Q9Y4B6 1507 aa28.64■■■□□ 2.18
LTBR-209ENST00000541102 UNC13AQ9UPW8 1703 aa28.58■■■□□ 2.17
LTBR-209ENST00000541102 DNAJC5BQ9UF47 199 aa28.46■■■□□ 2.15
LTBR-209ENST00000541102 BICRAQ9NZM4 1560 aa28.41■■■□□ 2.14
LTBR-209ENST00000541102 SCRIBQ14160 1630 aa28.29■■■□□ 2.12
LTBR-209ENST00000541102 SHROOM4Q9ULL8 1493 aa28.01■■■□□ 2.07
LTBR-209ENST00000541102 EIF4G1Q04637 1599 aaKnown RBP27.69■■■□□ 2.02
LTBR-209ENST00000541102 CC2D2AQ9P2K1 1620 aa27.67■■■□□ 2.02
LTBR-209ENST00000541102 CECR2Q9BXF3 1484 aa27.57■■■□□ 2
LTBR-209ENST00000541102 SMARCA4P51532 1647 aa26.99■■□□□ 1.91
LTBR-209ENST00000541102 NCAPD3P42695 1498 aa26.95■■□□□ 1.91
LTBR-209ENST00000541102 ATAD2BQ9ULI0 1458 aa26.94■■□□□ 1.9
LTBR-209ENST00000541102 BAZ1AQ9NRL2 1556 aaPredicted RBP26.92■■□□□ 1.9
LTBR-209ENST00000541102 SMARCA2P51531 1590 aa26.87■■□□□ 1.89
LTBR-209ENST00000541102 MROH2BQ7Z745 1585 aa26.8■■□□□ 1.88
LTBR-209ENST00000541102 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
LTBR-209ENST00000541102 BAZ1BQ9UIG0 1483 aaKnown RBP26.72■■□□□ 1.87
LTBR-209ENST00000541102 PEG3Q9GZU2 1588 aa26.67■■□□□ 1.86
LTBR-209ENST00000541102 WIZO95785 1651 aa26.49■■□□□ 1.83
LTBR-209ENST00000541102 ERCC6Q03468 1493 aa26.46■■□□□ 1.83
LTBR-209ENST00000541102 NESP48681 1621 aa26.46■■□□□ 1.83
LTBR-209ENST00000541102 RSF1Q96T23 1441 aaPredicted RBP26.4■■□□□ 1.82
LTBR-209ENST00000541102 LAMC3Q9Y6N6 1575 aa26.25■■□□□ 1.79
LTBR-209ENST00000541102 CADPSQ9ULU8 1353 aa26.2■■□□□ 1.78
LTBR-209ENST00000541102 CUX2O14529 1486 aa26.19■■□□□ 1.78
LTBR-209ENST00000541102 PDS5BQ9NTI5 1447 aa26.15■■□□□ 1.78
LTBR-209ENST00000541102 TOP2AP11388 1531 aaKnown RBP26.15■■□□□ 1.78
LTBR-209ENST00000541102 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
LTBR-209ENST00000541102 THOC2Q8NI27 1593 aaKnown RBP26.01■■□□□ 1.75
LTBR-209ENST00000541102 CFTRP13569 1480 aa25.95■■□□□ 1.74
LTBR-209ENST00000541102 CCDC88BA6NC98 1476 aa25.91■■□□□ 1.74
LTBR-209ENST00000541102 FANCD2Q9BXW9 1451 aa25.89■■□□□ 1.73
LTBR-209ENST00000541102 MRC2Q9UBG0 1479 aa25.89■■□□□ 1.73
LTBR-209ENST00000541102 CEP164Q9UPV0 1460 aa25.86■■□□□ 1.73
LTBR-209ENST00000541102 DNAJC5Q9H3Z4 198 aa25.81■■□□□ 1.72
LTBR-209ENST00000541102 WDR62O43379 1518 aa25.77■■□□□ 1.72
LTBR-209ENST00000541102 SUPT5HO00267 1087 aaKnown RBP25.69■■□□□ 1.7
LTBR-209ENST00000541102 URB2Q14146 1524 aaKnown RBP25.64■■□□□ 1.7
LTBR-209ENST00000541102 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
LTBR-209ENST00000541102 TOPBP1Q92547 1522 aa25.43■■□□□ 1.66
LTBR-209ENST00000541102 ABCC8Q09428 1581 aa25.39■■□□□ 1.65
LTBR-209ENST00000541102 DNMBPQ6XZF7 1577 aa25.35■■□□□ 1.65
LTBR-209ENST00000541102 IFT140Q96RY7 1462 aa25.34■■□□□ 1.65
LTBR-209ENST00000541102 ZNF608Q9ULD9 1512 aaPredicted RBP25.28■■□□□ 1.64
LTBR-209ENST00000541102 POLA1P09884 1462 aaPredicted RBP25.2■■□□□ 1.62
LTBR-209ENST00000541102 OSCARQ8IYS5 282 aa25.18■■□□□ 1.62
LTBR-209ENST00000541102 RAD54L2Q9Y4B4 1467 aa25.15■■□□□ 1.62
LTBR-209ENST00000541102 SOGA1O94964 1423 aa25.14■■□□□ 1.62
LTBR-209ENST00000541102 CUX1P39880 1505 aa25.14■■□□□ 1.62
LTBR-209ENST00000541102 TARBP1Q13395 1621 aaKnown RBP25.14■■□□□ 1.61
LTBR-209ENST00000541102 AQRO60306 1485 aaKnown RBP eCLIP25.14■■□□□ 1.617e-7■■■■□ 24.8
LTBR-209ENST00000541102 FGD5Q6ZNL6 1462 aa25.11■■□□□ 1.61
LTBR-209ENST00000541102 EIF4G3O43432 1585 aaKnown RBP25.1■■□□□ 1.61
LTBR-209ENST00000541102 TDRD9Q8NDG6 1382 aaKnown RBP25.06■■□□□ 1.6
LTBR-209ENST00000541102 FBLN2P98095 1184 aa24.99■■□□□ 1.59
LTBR-209ENST00000541102 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
LTBR-209ENST00000541102 WRNQ14191 1432 aaPredicted RBP eCLIP24.9■■□□□ 1.58
LTBR-209ENST00000541102 WDR97A6NE52 1622 aa24.86■■□□□ 1.57
LTBR-209ENST00000541102 SNAPC4Q5SXM2 1469 aa24.85■■□□□ 1.57
LTBR-209ENST00000541102 CHD1O14646 1710 aa24.85■■□□□ 1.57
LTBR-209ENST00000541102 GRIN2BQ13224 1484 aa24.84■■□□□ 1.57
LTBR-209ENST00000541102 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
LTBR-209ENST00000541102 SYNJ1O43426 1573 aa24.82■■□□□ 1.56
LTBR-209ENST00000541102 TOP2BQ02880 1626 aa24.82■■□□□ 1.56
LTBR-209ENST00000541102 GAPVD1Q14C86 1478 aa24.82■■□□□ 1.56
LTBR-209ENST00000541102 ABCA10Q8WWZ4 1543 aa24.81■■□□□ 1.56
LTBR-209ENST00000541102 BIVM-ERCC5R4GMW8 1640 aa24.79■■□□□ 1.56
LTBR-209ENST00000541102 MAGI1Q96QZ7 1491 aaPredicted RBP24.77■■□□□ 1.56
LTBR-209ENST00000541102 RIMBP3CA6NJZ7 1639 aa24.72■■□□□ 1.55
LTBR-209ENST00000541102 RIMBP3BA6NNM3 1639 aa24.72■■□□□ 1.55
LTBR-209ENST00000541102 ABCA5Q8WWZ7 1642 aa24.72■■□□□ 1.55
LTBR-209ENST00000541102 RIMBP3Q9UFD9 1639 aa24.72■■□□□ 1.55
LTBR-209ENST00000541102 PBRM1Q86U86 1689 aa24.71■■□□□ 1.55
LTBR-209ENST00000541102 SYNJ2O15056 1496 aa24.7■■□□□ 1.54
LTBR-209ENST00000541102 ARHGEF11O15085 1522 aa24.68■■□□□ 1.54
LTBR-209ENST00000541102 CYB5RLQ6IPT4 315 aa24.61■■□□□ 1.53
LTBR-209ENST00000541102 CLASP1Q7Z460 1538 aa24.56■■□□□ 1.52
LTBR-209ENST00000541102 ADAMTS12P58397 1594 aa24.51■■□□□ 1.51
LTBR-209ENST00000541102 FHAD1B1AJZ9 1412 aa24.51■■□□□ 1.51
LTBR-209ENST00000541102 GRIN2AQ12879 1464 aa24.51■■□□□ 1.51
LTBR-209ENST00000541102 ERICH3Q5RHP9 1530 aa24.5■■□□□ 1.51
LTBR-209ENST00000541102 ARAP1Q96P48 1450 aa24.47■■□□□ 1.51
LTBR-209ENST00000541102 KIF27Q86VH2 1401 aa24.41■■□□□ 1.5
LTBR-209ENST00000541102 NUP160Q12769 1436 aa24.39■■□□□ 1.5
LTBR-209ENST00000541102 CEP170Q5SW79 1584 aa24.38■■□□□ 1.49
LTBR-209ENST00000541102 IGF1RP08069 1367 aa24.37■■□□□ 1.49
LTBR-209ENST00000541102 ERCC6L2Q5T890 1561 aa24.26■■□□□ 1.47
LTBR-209ENST00000541102 JPH4Q96JJ6 628 aa24.25■■□□□ 1.47
LTBR-209ENST00000541102 TRHP20396 242 aaPredicted RBP24.23■■□□□ 1.47
LTBR-209ENST00000541102 CARMIL1Q5VZK9 1371 aa24.22■■□□□ 1.47
LTBR-209ENST00000541102 CUL7Q14999 1698 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms