RNA–Protein interactions for RNA: ENST00000270722.9

PRDM16-201, Transcript of PR/SET domain 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRDM16, Length 8,690 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM16-201ENST00000270722 MYT1Q01538 1121 aa22.54■■□□□ 1.2
PRDM16-201ENST00000270722 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
PRDM16-201ENST00000270722 PELP1Q8IZL8 1130 aaKnown RBP22.04■■□□□ 1.12
PRDM16-201ENST00000270722 FAM9AQ8IZU1 332 aaPredicted RBP21.23■□□□□ 0.99
PRDM16-201ENST00000270722 TTBK1Q5TCY1 1321 aaPredicted RBP21.15■□□□□ 0.98
PRDM16-201ENST00000270722 CCER1Q8TC90 406 aaPredicted RBP20.82■□□□□ 0.92
PRDM16-201ENST00000270722 APLP2Q06481 763 aa20.76■□□□□ 0.91
PRDM16-201ENST00000270722 ERICH6Q7L0X2 663 aa20.76■□□□□ 0.91
PRDM16-201ENST00000270722 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
PRDM16-201ENST00000270722 SUPT5HO00267 1087 aaKnown RBP20.45■□□□□ 0.86
PRDM16-201ENST00000270722 CENPBP07199 599 aaPredicted RBP20.23■□□□□ 0.83
PRDM16-201ENST00000270722 NISCHQ9Y2I1 1504 aa20.07■□□□□ 0.8
PRDM16-201ENST00000270722 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
PRDM16-201ENST00000270722 SHROOM4Q9ULL8 1493 aa19.7■□□□□ 0.74
PRDM16-201ENST00000270722 NEFLP07196 543 aa19.68■□□□□ 0.74
PRDM16-201ENST00000270722 ZEB1P37275 1124 aaPredicted RBP19.65■□□□□ 0.74
PRDM16-201ENST00000270722 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
PRDM16-201ENST00000270722 GLIPR1L2Q4G1C9 344 aa19.62■□□□□ 0.73
PRDM16-201ENST00000270722 ATP1B4Q9UN42 357 aaPredicted RBP19.53■□□□□ 0.72
PRDM16-201ENST00000270722 DAXXQ9UER7 740 aaPredicted RBP19.44■□□□□ 0.7
PRDM16-201ENST00000270722 RTL5Q5HYW3 569 aaPredicted RBP19.33■□□□□ 0.68
PRDM16-201ENST00000270722 MYT1LQ9UL68 1186 aa19.3■□□□□ 0.68
PRDM16-201ENST00000270722 PCGF6Q9BYE7 350 aa19.3■□□□□ 0.68
PRDM16-201ENST00000270722 UBTFP17480 764 aaKnown RBP19.28■□□□□ 0.68
PRDM16-201ENST00000270722 TRIM41Q8WV44 630 aa19.25■□□□□ 0.67
PRDM16-201ENST00000270722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
PRDM16-201ENST00000270722 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.64
PRDM16-201ENST00000270722 CLSPNQ9HAW4 1339 aa18.9■□□□□ 0.62
PRDM16-201ENST00000270722 ZNF316A6NFI3 1004 aaPredicted RBP18.85■□□□□ 0.61
PRDM16-201ENST00000270722 SLC4A1APQ9BWU0 796 aaKnown RBP18.79■□□□□ 0.6
PRDM16-201ENST00000270722 ZBTB47Q9UFB7 747 aaPredicted RBP18.77■□□□□ 0.6
PRDM16-201ENST00000270722 POLR3GLQ9BT43 218 aa18.74■□□□□ 0.59
PRDM16-201ENST00000270722 EIF5BO60841 1220 aaKnown RBP18.69■□□□□ 0.58
PRDM16-201ENST00000270722 NEFMP07197 916 aa18.63■□□□□ 0.57
PRDM16-201ENST00000270722 CHIC1Q5VXU3 224 aa18.57■□□□□ 0.56
PRDM16-201ENST00000270722 TNNT2P45379 298 aaPredicted RBP18.51■□□□□ 0.55
PRDM16-201ENST00000270722 SLC24A1O60721 1099 aa18.5■□□□□ 0.55
PRDM16-201ENST00000270722 ITGAEP38570 1179 aa18.45■□□□□ 0.54
PRDM16-201ENST00000270722 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
PRDM16-201ENST00000270722 ANP32BQ92688 251 aaKnown RBP18.36■□□□□ 0.53
PRDM16-201ENST00000270722 NCLP19338 710 aaKnown RBP18.35■□□□□ 0.53
PRDM16-201ENST00000270722 ESF1Q9H501 851 aaKnown RBP18.32■□□□□ 0.52
PRDM16-201ENST00000270722 BCANQ96GW7 911 aa18.27■□□□□ 0.51
PRDM16-201ENST00000270722 CDK11BP21127 795 aaKnown RBP18.25■□□□□ 0.51
PRDM16-201ENST00000270722 CANXP27824 592 aaKnown RBP18.23■□□□□ 0.51
PRDM16-201ENST00000270722 TRIM44Q96DX7 344 aaPredicted RBP18.21■□□□□ 0.51
PRDM16-201ENST00000270722 TRIM52Q96A61 297 aa18.21■□□□□ 0.51
PRDM16-201ENST00000270722 CDK11AQ9UQ88 783 aaPredicted RBP18.21■□□□□ 0.5
PRDM16-201ENST00000270722 HRCP23327 699 aa18.17■□□□□ 0.5
PRDM16-201ENST00000270722 CNGB1Q14028 1251 aaPredicted RBP18.17■□□□□ 0.5
PRDM16-201ENST00000270722 FAM50AQ14320 339 aaKnown RBP18.14■□□□□ 0.49
PRDM16-201ENST00000270722 ANP32AP39687 249 aaKnown RBP18.13■□□□□ 0.49
PRDM16-201ENST00000270722 ZNF326Q5BKZ1 582 aaKnown RBP18.07■□□□□ 0.48
PRDM16-201ENST00000270722 ANP32CO43423 234 aa18.06■□□□□ 0.48
PRDM16-201ENST00000270722 PPARGC1BQ86YN6 1023 aaKnown RBP17.99■□□□□ 0.47
PRDM16-201ENST00000270722 NPM1P06748 294 aaKnown RBP eCLIP17.98■□□□□ 0.47
PRDM16-201ENST00000270722 FBLN2P98095 1184 aa17.98■□□□□ 0.47
PRDM16-201ENST00000270722 NPM2Q86SE8 214 aaKnown RBP17.96■□□□□ 0.47
PRDM16-201ENST00000270722 STAG3Q9UJ98 1225 aa17.96■□□□□ 0.47
PRDM16-201ENST00000270722 UPF2Q9HAU5 1272 aaKnown RBP17.96■□□□□ 0.47
PRDM16-201ENST00000270722 HSP90AA1P07900 732 aaKnown RBP17.94■□□□□ 0.46
PRDM16-201ENST00000270722 GTF3C3Q9Y5Q9 886 aa17.92■□□□□ 0.46
PRDM16-201ENST00000270722 PTMSP20962 102 aa17.88■□□□□ 0.45
PRDM16-201ENST00000270722 DIEXFQ68CQ4 756 aaKnown RBP17.84■□□□□ 0.45
PRDM16-201ENST00000270722 NEUROD1Q13562 356 aa17.78■□□□□ 0.44
PRDM16-201ENST00000270722 ERICH6BQ5W0A0 696 aa17.75■□□□□ 0.43
PRDM16-201ENST00000270722 ANP32EQ9BTT0 268 aa17.75■□□□□ 0.43
PRDM16-201ENST00000270722 BCL11AQ9H165 835 aa17.75■□□□□ 0.43
PRDM16-201ENST00000270722 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.71■□□□□ 0.43
PRDM16-201ENST00000270722 CALRP27797 417 aaKnown RBP17.71■□□□□ 0.43
PRDM16-201ENST00000270722 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
PRDM16-201ENST00000270722 MYH16Q9H6N6 1097 aa17.67■□□□□ 0.42
PRDM16-201ENST00000270722 ZNF777Q9ULD5 760 aaPredicted RBP17.58■□□□□ 0.4
PRDM16-201ENST00000270722 CHGAP10645 457 aaKnown RBP17.58■□□□□ 0.4
PRDM16-201ENST00000270722 TONSLQ96HA7 1378 aa17.52■□□□□ 0.39
PRDM16-201ENST00000270722 ABCC9O60706 1549 aa17.51■□□□□ 0.39
PRDM16-201ENST00000270722 SCAF1Q9H7N4 1312 aaKnown RBP17.51■□□□□ 0.39
PRDM16-201ENST00000270722 ZRSR1Q15695 479 aaKnown RBP17.49■□□□□ 0.39
PRDM16-201ENST00000270722 A0A0G2JS52 829 aa17.47■□□□□ 0.39
PRDM16-201ENST00000270722 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
PRDM16-201ENST00000270722 NAP1L5Q96NT1 182 aaPredicted RBP17.46■□□□□ 0.39
PRDM16-201ENST00000270722 WDR43Q15061 677 aaKnown RBP eCLIP17.46■□□□□ 0.39
PRDM16-201ENST00000270722 TSPY4P0CV99 314 aa17.45■□□□□ 0.38
PRDM16-201ENST00000270722 TSPY10P0CW01 314 aa17.45■□□□□ 0.38
PRDM16-201ENST00000270722 HAP1P54257 671 aaPredicted RBP17.45■□□□□ 0.38
PRDM16-201ENST00000270722 C14orf37Q86TY3 774 aa17.44■□□□□ 0.38
PRDM16-201ENST00000270722 NBR1Q14596 966 aa17.44■□□□□ 0.38
PRDM16-201ENST00000270722 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
PRDM16-201ENST00000270722 PPP1R15AO75807 674 aaPredicted RBP17.41■□□□□ 0.38
PRDM16-201ENST00000270722 TNNT3P45378 269 aaPredicted RBP17.4■□□□□ 0.38
PRDM16-201ENST00000270722 GOLGA6L22H0YM25 854 aa17.39■□□□□ 0.37
PRDM16-201ENST00000270722 PLPPR3Q6T4P5 718 aa17.38■□□□□ 0.37
PRDM16-201ENST00000270722 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
PRDM16-201ENST00000270722 EIF4G2P78344 907 aaKnown RBP eCLIP17.36■□□□□ 0.37
PRDM16-201ENST00000270722 CASC1Q6TDU7 716 aa17.35■□□□□ 0.37
PRDM16-201ENST00000270722 CDCA8Q53HL2 280 aa17.34■□□□□ 0.37
PRDM16-201ENST00000270722 CHMP4BQ9H444 224 aaKnown RBP17.34■□□□□ 0.37
PRDM16-201ENST00000270722 DDRGK1Q96HY6 314 aa17.33■□□□□ 0.36
PRDM16-201ENST00000270722 BECN1Q14457 450 aa17.33■□□□□ 0.36
PRDM16-201ENST00000270722 NPHP1O15259 732 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms